Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BAM5036_RS06875 Genome accession   NC_020410
Coordinates   1338015..1338479 (-) Length   154 a.a.
NCBI ID   WP_015417366.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333015..1343479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS06860 (BAM5036_1314) - 1333496..1335316 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  BAM5036_RS06865 (BAM5036_1315) - 1335297..1336510 (-) 1214 Protein_1320 aminotransferase A -
  BAM5036_RS20465 (BAM5036_1316) - 1336711..1336872 (-) 162 WP_007409608.1 hypothetical protein -
  BAM5036_RS06870 (BAM5036_1317) cheV 1337061..1337972 (+) 912 WP_015417365.1 chemotaxis protein CheV -
  BAM5036_RS06875 (BAM5036_1318) kre 1338015..1338479 (-) 465 WP_015417366.1 YkyB family protein Regulator
  BAM5036_RS06880 (BAM5036_1319) - 1338602..1339894 (-) 1293 WP_015239757.1 MFS transporter -
  BAM5036_RS06885 (BAM5036_1320) - 1339970..1340464 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  BAM5036_RS06890 (BAM5036_1321) - 1340539..1341402 (-) 864 WP_015417367.1 metallophosphoesterase -
  BAM5036_RS06895 (BAM5036_1322) fadH 1341547..1342311 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  BAM5036_RS06900 (BAM5036_1323) - 1342425..1342928 (+) 504 WP_015417369.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.62 Da        Isoelectric Point: 10.5281

>NTDB_id=56366 BAM5036_RS06875 WP_015417366.1 1338015..1338479(-) (kre) [Bacillus velezensis UCMB5036]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAAKRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=56366 BAM5036_RS06875 WP_015417366.1 1338015..1338479(-) (kre) [Bacillus velezensis UCMB5036]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAAAAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.208

100

0.922

Multiple sequence alignment