Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L2I08_RS20725 Genome accession   NZ_CP091820
Coordinates   4800405..4802492 (+) Length   695 a.a.
NCBI ID   WP_003947452.1    Uniprot ID   A0ABR4SBW3
Organism   Streptomyces sp. NBU3104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4795405..4807492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS20700 (L2I08_20700) - 4795483..4796250 (+) 768 WP_129811898.1 ABC transporter permease -
  L2I08_RS20705 (L2I08_20705) - 4796305..4797315 (+) 1011 WP_018470525.1 COX15/CtaA family protein -
  L2I08_RS20710 (L2I08_20710) - 4797380..4798483 (-) 1104 WP_008406085.1 amidohydrolase -
  L2I08_RS20715 (L2I08_20715) - 4798584..4798949 (-) 366 WP_008406083.1 hypothetical protein -
  L2I08_RS20720 (L2I08_20720) - 4799060..4800022 (-) 963 WP_003947450.1 heme o synthase -
  L2I08_RS20725 (L2I08_20725) recP/tkt 4800405..4802492 (+) 2088 WP_003947452.1 transketolase Machinery gene
  L2I08_RS20730 (L2I08_20730) tal 4802534..4803676 (+) 1143 WP_003947453.1 transaldolase -
  L2I08_RS20735 (L2I08_20735) zwf 4803691..4805214 (+) 1524 WP_003947454.1 glucose-6-phosphate dehydrogenase -
  L2I08_RS20740 (L2I08_20740) opcA 4805211..4806251 (+) 1041 WP_003947455.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  L2I08_RS20745 (L2I08_20745) pgl 4806248..4807033 (+) 786 WP_003947456.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74825.74 Da        Isoelectric Point: 4.9201

>NTDB_id=563581 L2I08_RS20725 WP_003947452.1 4800405..4802492(+) (recP/tkt) [Streptomyces sp. NBU3104]
MSTKPTTTDFEWTAEDQRAVDTVRVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADANWTGRDRFVLSVGHSS
LTLYIQLYLAGFGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAEGTSPF
DHHIYCIAGDGCLQEGISAEASSTAGHQKLGNLIMLWDDNHISIEGDTETAVSEDTLKRYEAYGWHVQRVAPKENGDLDP
AALYEAIEAAKAETGRPSFIAMRSIIAWPAPNAQNTEAAHGSALGDDEVAATKRVLGFDPEKSFEVSDEVLAYTRGALDR
GRELRAEWEKGYAAWRTASPEHAALFDRVAAGELPEGWEDALPVFETGKAVATRAASGKILQALGAVVPELWGGSADLAG
SNNTTIDKTSSFLPAGNPLPEADPYGRTIHFGIREHAMAAEMNGIQLHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLNLVRPADANETVVAWREIMRRWTKVYGKGAPHGLALTRQGVPTYELNE
NAARGGYVLAEAEGGEPQVILIGTGSEVQLAVGAREQLQAAGVPTRVVSVPCVEWFEEQDEAYRESVLPRAVRARVAVEA
GIGLTWYRFVGDAGRIVSLEHFGASADAKVLFREFGFTADAVAEAARESLAAAQR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=563581 L2I08_RS20725 WP_003947452.1 4800405..4802492(+) (recP/tkt) [Streptomyces sp. NBU3104]
GTGAGCACCAAGCCGACCACCACAGACTTCGAGTGGACCGCAGAGGACCAGCGGGCCGTCGACACCGTCCGCGTCCTGGC
CGCAGACGCCGTACAGAAGGTCGGCAACGGCCATCCCGGTACGGCCATGAGCCTCGCGCCGGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCGGCGGACGCCAACTGGACGGGGCGCGACCGCTTCGTCCTCTCCGTGGGCCACTCGTCC
CTGACCCTCTACATCCAGCTCTACCTGGCCGGCTTCGGCCTGGAGCTGGACGACCTGAAGGCCTTCCGCACCTGGGGCTC
GAAGACCCCCGGGCACCCGGAGTACGGCCACACCACCGGCGTGGAGACCACCACCGGCCCGCTCGGGCAGGGTGTGGCCA
ACGCGGTGGGCATGGCCATGGCCGCGCGGTACGAGCGCGGGCTGTTCGACCCGGAGGCGGCCGAGGGCACCTCCCCGTTC
GACCACCACATCTACTGCATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCCGAGGCCTCCTCCACCGCCGGGCA
CCAGAAGCTCGGCAACCTGATCATGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACCGAGACGGCCGTCTCCG
AGGACACCCTCAAGCGGTACGAGGCGTACGGCTGGCACGTGCAGCGGGTGGCGCCCAAGGAGAACGGCGACCTGGACCCG
GCCGCCCTGTACGAGGCGATCGAGGCGGCGAAGGCGGAGACCGGGCGTCCCTCCTTCATCGCGATGCGCTCGATCATCGC
CTGGCCGGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGACGAGGTCGCCGCGACCAAGC
GCGTCCTCGGCTTCGACCCGGAGAAGAGCTTCGAGGTCTCCGACGAGGTCCTGGCGTACACCCGTGGCGCCCTGGACCGC
GGCCGCGAGCTGCGCGCCGAGTGGGAGAAGGGGTACGCCGCCTGGCGCACCGCCAGTCCCGAGCACGCCGCGCTCTTCGA
CCGCGTCGCCGCCGGTGAGCTGCCCGAGGGCTGGGAGGACGCGCTGCCGGTCTTCGAGACCGGCAAGGCCGTCGCCACCC
GTGCCGCCTCCGGCAAGATCCTCCAGGCGCTCGGCGCGGTCGTGCCCGAGCTGTGGGGCGGCTCCGCCGACCTGGCCGGC
TCGAACAACACGACGATCGACAAGACCTCGTCGTTCCTGCCCGCGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
AACCATCCACTTCGGCATCCGTGAGCACGCGATGGCCGCCGAGATGAACGGCATCCAGCTCCACGGCAACACCCGTATCT
ACGGCGGCACGTTCCTGGTCTTCTCCGACTACATGCGCAACGCGGTGCGCCTCTCCGCGCTGATGCACCTGCCGGTGACC
TACGTGTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTGGAGCACCTGGCCGCGCTGCG
CGCCATCCCGGGCCTCAACCTGGTCCGCCCGGCCGACGCCAACGAGACGGTCGTCGCCTGGCGGGAGATCATGCGCCGGT
GGACCAAGGTGTACGGCAAGGGTGCCCCGCACGGTCTGGCGCTGACCCGTCAGGGCGTGCCGACCTACGAGCTCAACGAG
AACGCGGCCCGTGGCGGCTACGTCCTCGCGGAGGCCGAGGGCGGCGAGCCGCAGGTCATCCTGATCGGCACCGGCTCCGA
GGTGCAGCTGGCCGTGGGCGCCCGCGAGCAGCTCCAGGCTGCCGGCGTGCCCACCCGGGTGGTCTCCGTGCCGTGTGTCG
AGTGGTTCGAGGAGCAGGACGAGGCGTACCGCGAGTCGGTGCTGCCGCGTGCCGTGCGCGCACGGGTGGCGGTCGAGGCC
GGCATCGGCCTGACCTGGTACCGCTTCGTGGGCGACGCCGGCCGGATCGTCTCGCTGGAGCACTTCGGTGCCTCGGCGGA
CGCGAAGGTGCTGTTCCGCGAGTTCGGCTTCACCGCGGACGCGGTCGCCGAGGCCGCCCGGGAATCCCTCGCCGCCGCTC
AGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(575-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.889

97.122

0.436