Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   L2I08_RS09110 Genome accession   NZ_CP091820
Coordinates   2022690..2023475 (-) Length   261 a.a.
NCBI ID   WP_237895577.1    Uniprot ID   -
Organism   Streptomyces sp. NBU3104     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2017690..2028475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS09100 (L2I08_09100) - 2018657..2020519 (+) 1863 WP_129827822.1 IucA/IucC family siderophore biosynthesis protein -
  L2I08_RS09105 (L2I08_09105) - 2020606..2022594 (+) 1989 WP_003951281.1 ATP-dependent DNA helicase -
  L2I08_RS09110 (L2I08_09110) dinR/lexA 2022690..2023475 (-) 786 WP_237895577.1 transcriptional repressor LexA Regulator
  L2I08_RS09115 (L2I08_09115) nrdR 2024097..2024609 (+) 513 WP_003951283.1 transcriptional regulator NrdR -
  L2I08_RS09120 (L2I08_09120) - 2024747..2027617 (+) 2871 WP_008410831.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28206.94 Da        Isoelectric Point: 8.9090

>NTDB_id=563565 L2I08_RS09110 WP_237895577.1 2022690..2023475(-) (dinR/lexA) [Streptomyces sp. NBU3104]
MTTTADSATITAQGRSQGRRESVHAMNEPASPQEGSKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPADTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=563565 L2I08_RS09110 WP_237895577.1 2022690..2023475(-) (dinR/lexA) [Streptomyces sp. NBU3104]
GTGACCACGACCGCAGACAGCGCCACCATCACCGCCCAGGGCCGGTCCCAGGGACGACGGGAGTCGGTGCACGCCATGAA
TGAGCCCGCCTCGCCCCAGGAGGGGTCGAAGCCCGCCCGCTCGCTCCCCGGACGACCTCCGGGCATCCGCGCGGACAGCT
CAGGACTGACCGACCGGCAGCGCCGCGTGATCGAGGTCATCCGCGACTCGGTGCAGCGCCGCGGCTACCCGCCGTCGATG
CGGGAGATCGGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTGGCCCACCAGCTGATGGCCCTGGAGCGCAAGGGCTT
CCTCCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCCGACCAGCCGAGCGCGCAGCCCGCGGACACCA
CGGGCAAGCCCGCCGCCTCCTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGCGGGCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCCCTCCCCCGCCAGCTGGTCGGCGACGGTGAGCTCTTCGTGCTCAAGGTCGTCGGTGACTCCATGAT
CGAGGCGGCCATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCCACCGTGAAGCGGTTCAAGCGCGAGGACAACCACATCTGGCTCCTCCCGCACAATGCGGCCTAC
CAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTCCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379