Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   L2I08_RS05915 Genome accession   NZ_CP091820
Coordinates   1280638..1281618 (+) Length   326 a.a.
NCBI ID   WP_003950652.1    Uniprot ID   A0ABR4SAQ8
Organism   Streptomyces sp. NBU3104     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1275638..1286618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS05895 (L2I08_05895) - 1275648..1276796 (+) 1149 WP_018469336.1 dipeptide ABC transporter ATP-binding protein -
  L2I08_RS05900 (L2I08_05900) - 1277000..1278631 (+) 1632 WP_003950649.1 ABC transporter substrate-binding protein -
  L2I08_RS05905 (L2I08_05905) - 1278722..1279645 (+) 924 WP_003950650.1 ABC transporter permease -
  L2I08_RS05910 (L2I08_05910) - 1279638..1280624 (+) 987 WP_003950651.1 ABC transporter permease -
  L2I08_RS05915 (L2I08_05915) amiE 1280638..1281618 (+) 981 WP_003950652.1 ABC transporter ATP-binding protein Regulator
  L2I08_RS05920 (L2I08_05920) - 1281605..1282831 (+) 1227 WP_033240313.1 dipeptide ABC transporter ATP-binding protein -
  L2I08_RS05925 (L2I08_05925) - 1283032..1283904 (+) 873 WP_237897252.1 aminoglycoside phosphotransferase family protein -
  L2I08_RS05930 (L2I08_05930) - 1284002..1285003 (+) 1002 WP_237895429.1 hypothetical protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35781.39 Da        Isoelectric Point: 6.2366

>NTDB_id=563552 L2I08_RS05915 WP_003950652.1 1280638..1281618(+) (amiE) [Streptomyces sp. NBU3104]
MLLDVRDLQVEFHTREGVAKAVNGVSYSVDAGETLAVLGESGSGKSVTAQAIMGILDTPPGHITGGEIIFEGRDLLTLKE
DRRRKVRGAEMAMIFQDALSSLNPVLTVGEQLGEMFTVHRGMSRKDAKARAVELMDRVRIPAATARVDQYPHQFSGGMRQ
RIMIAMAMALEPKLIIADEPTTALDVTVQAQVMELLAELQREYNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYRAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLAIPPGCAFHPRCPLAQPVCTTDEPPLYEVDPRRRSACHFWKE
TLDGAR

Nucleotide


Download         Length: 981 bp        

>NTDB_id=563552 L2I08_RS05915 WP_003950652.1 1280638..1281618(+) (amiE) [Streptomyces sp. NBU3104]
ATGTTGCTCGACGTGCGCGACCTCCAGGTGGAGTTCCACACCAGGGAAGGCGTCGCCAAGGCCGTCAACGGCGTCTCCTA
CTCCGTCGACGCGGGGGAGACCCTGGCGGTGCTCGGCGAATCCGGCTCCGGAAAGTCCGTCACCGCCCAGGCGATCATGG
GCATCCTCGACACCCCGCCCGGGCACATCACGGGCGGGGAGATCATCTTCGAGGGGCGCGACCTGCTGACCCTCAAGGAG
GACCGGCGGCGCAAGGTGCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTCTCCTCGCTCAACCCGGTACTCAC
CGTCGGCGAGCAGCTCGGCGAGATGTTCACCGTCCACCGCGGCATGTCCCGCAAGGACGCCAAGGCGCGGGCGGTCGAGC
TGATGGACCGGGTCCGCATCCCGGCCGCCACCGCACGCGTCGACCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAGCCCAAGCTGATCATCGCCGACGAGCCCACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGAGTTGCTCGCGGAACTCCAGCGCGAGTACAACATGGGGCTCATCCTCATCACCCACGACC
TCGGTGTCGTCGCCGACGTCGCCGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCCGTCCACGAC
ATCTACCGGGCCCCCGCCCACCCGTACACCCGGGGACTGCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGGCTGCCGCCCAACCTGCTGGCCATCCCGCCCGGCTGCGCCTTCCACCCGCGCTGCCCGCTGGCCC
AGCCGGTCTGCACCACCGACGAGCCGCCGCTCTACGAGGTCGACCCGCGCCGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGGAGCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.749

99.08

0.463
  amiE Streptococcus thermophilus LMG 18311

46.13

99.08

0.457
  amiE Streptococcus thermophilus LMD-9

46.13

99.08

0.457
  oppD Streptococcus mutans UA159

45.86

96.319

0.442