Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   L2I08_RS05890 Genome accession   NZ_CP091820
Coordinates   1274597..1275655 (+) Length   352 a.a.
NCBI ID   WP_003950647.1    Uniprot ID   A0ABR4SBH8
Organism   Streptomyces sp. NBU3104     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269597..1280655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS05875 (L2I08_05875) - 1270934..1272556 (+) 1623 WP_018469338.1 ABC transporter substrate-binding protein -
  L2I08_RS05880 (L2I08_05880) - 1272695..1273624 (+) 930 WP_026235140.1 ABC transporter permease -
  L2I08_RS05885 (L2I08_05885) - 1273617..1274585 (+) 969 WP_003950646.1 ABC transporter permease -
  L2I08_RS05890 (L2I08_05890) amiE 1274597..1275655 (+) 1059 WP_003950647.1 ABC transporter ATP-binding protein Regulator
  L2I08_RS05895 (L2I08_05895) - 1275648..1276796 (+) 1149 WP_018469336.1 dipeptide ABC transporter ATP-binding protein -
  L2I08_RS05900 (L2I08_05900) - 1277000..1278631 (+) 1632 WP_003950649.1 ABC transporter substrate-binding protein -
  L2I08_RS05905 (L2I08_05905) - 1278722..1279645 (+) 924 WP_003950650.1 ABC transporter permease -
  L2I08_RS05910 (L2I08_05910) - 1279638..1280624 (+) 987 WP_003950651.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38396.30 Da        Isoelectric Point: 6.5011

>NTDB_id=563551 L2I08_RS05890 WP_003950647.1 1274597..1275655(+) (amiE) [Streptomyces sp. NBU3104]
MTTTAKTATVPGPRAAADYDGHLLEVRDLHVEFHTRDGVAKAVNGVNYTVDAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPQGEVLFRGQDMLTMGKEERRKIRGQKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKEAKAKAIELMERVK
IPAAKERVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYARPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPSGCAFNPRCPMAQDICRT
EVPTLAPVTEQDGTDLPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=563551 L2I08_RS05890 WP_003950647.1 1274597..1275655(+) (amiE) [Streptomyces sp. NBU3104]
GTGACCACCACCGCCAAGACCGCGACGGTCCCCGGACCGCGAGCGGCCGCCGACTACGACGGCCACCTGCTCGAAGTCCG
TGACCTGCACGTGGAGTTCCACACCCGGGACGGCGTCGCCAAGGCCGTCAACGGGGTCAACTACACCGTCGACGCCGGCG
AGACCCTCGCCGTCCTCGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCCCAGGCCATCATGGGCATCCTCGACATGCCG
CCCGGCCGCATCCCGCAGGGCGAGGTGCTCTTCCGCGGCCAGGACATGCTCACCATGGGCAAGGAGGAGCGGCGGAAGAT
CCGCGGCCAGAAGATCGCCATGATCTTCCAGGACGCGCTCTCCTCGCTCAACCCGGTGCTCTCCGTCGGCTACCAGCTCG
GCGAGATGTTCCGCGTCCACCAGGGCCTCTCCAAGAAGGAGGCCAAGGCCAAGGCCATCGAGCTGATGGAGCGGGTGAAG
ATCCCCGCCGCCAAGGAGCGGGTCAACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTCGCCCTGGAGCCCGACCTGATCATCGCCGACGAGCCCACCACGGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTCGCGGAGCTGCAGCGCGAGTACAACATGGGGCTCATCCTCATCACCCACGACCTCGGTGTCGTCGCCGAC
GTCGCCGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCGGTCCACGAGCTGTACGCCCGCCCGGC
GCACCCCTACACCCGGGGTCTGCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTACGCGATCAAGGGCC
TGCCGCCCAACCTGACGCGTATCCCCTCCGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCGCAGGACATCTGCCGCACC
GAGGTGCCCACCCTGGCGCCCGTCACCGAGCAGGACGGTACGGACCTGCCCGGCCGCGGCAGCGCCTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.351

84.091

0.432
  amiE Streptococcus thermophilus LMG 18311

50.676

84.091

0.426
  amiE Streptococcus thermophilus LMD-9

50.676

84.091

0.426
  oppD Streptococcus mutans UA159

48.701

87.5

0.426