Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   L2I08_RS04470 Genome accession   NZ_CP091820
Coordinates   940629..941645 (-) Length   338 a.a.
NCBI ID   WP_237895345.1    Uniprot ID   -
Organism   Streptomyces sp. NBU3104     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 935629..946645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS04435 (L2I08_04435) - 935872..936315 (+) 444 WP_015507239.1 hypothetical protein -
  L2I08_RS04440 (L2I08_04440) - 936469..937302 (+) 834 WP_026048337.1 MurR/RpiR family transcriptional regulator -
  L2I08_RS04445 (L2I08_04445) - 937469..938008 (+) 540 WP_049978847.1 hypothetical protein -
  L2I08_RS04450 (L2I08_04450) - 938051..938425 (-) 375 WP_003950372.1 hypothetical protein -
  L2I08_RS04455 (L2I08_04455) - 938482..938991 (-) 510 WP_008417684.1 roadblock/LC7 domain-containing protein -
  L2I08_RS04460 (L2I08_04460) - 939030..939785 (-) 756 WP_234373586.1 transcriptional regulator -
  L2I08_RS04465 (L2I08_04465) - 939836..940246 (-) 411 WP_003950375.1 hypothetical protein -
  L2I08_RS04470 (L2I08_04470) cytR 940629..941645 (-) 1017 WP_237895345.1 LacI family DNA-binding transcriptional regulator Regulator
  L2I08_RS04475 (L2I08_04475) - 941962..943272 (+) 1311 WP_237895346.1 extracellular solute-binding protein -
  L2I08_RS04480 (L2I08_04480) - 943379..944374 (+) 996 WP_003950378.1 sugar ABC transporter permease -
  L2I08_RS04485 (L2I08_04485) - 944389..945324 (+) 936 WP_237895347.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36105.80 Da        Isoelectric Point: 5.2972

>NTDB_id=563547 L2I08_RS04470 WP_237895345.1 940629..941645(-) (cytR) [Streptomyces sp. NBU3104]
MGSRQRPTIKTVAARAGVGRTTVSRVINGSELVSDEARTAVLAAIAELNYVPNSVARGLVTSRTDSVALVIPESESRLGS
EPYFSAVIRGVSTGLTERRIQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEQDPLPGLLENMGLPTVLAGRRAHGE
PLSHVRADNEGGAAAAVAHLVARGRRRIATISGPLDMDVSRSRLDGWRDALRDEGVEAAETLVATADFTEAGGESAMRSL
LERDPGLDAVFAASDVMAAGALAELRRQGRRVPDDVALIGFDDSVIARHSNPPLTSVRQPVEAIGRTMAQILLAEIDDPG
QPRQHVVLPTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=563547 L2I08_RS04470 WP_237895345.1 940629..941645(-) (cytR) [Streptomyces sp. NBU3104]
ATGGGCAGCAGGCAACGCCCGACGATCAAGACCGTCGCCGCGCGTGCGGGCGTGGGACGGACCACGGTCTCCCGCGTCAT
CAACGGTTCGGAGCTGGTCAGCGACGAGGCCAGGACGGCCGTGCTCGCCGCCATCGCGGAGCTGAACTACGTGCCCAACT
CGGTCGCGCGGGGGCTGGTGACCAGCAGGACGGACTCCGTCGCCCTGGTCATCCCGGAGTCGGAGAGCCGGCTGGGCTCG
GAGCCCTACTTCTCCGCCGTCATCCGCGGCGTCAGCACCGGTCTCACCGAGCGGCGGATCCAGCTCCAACTGGTCCTCGT
ACGCGACCAGGCCGAGCGCGACCAGCTCACCGAGTCGGTCGCCGAGCGCCGGGTGGACGGGGTGCTGCTGGTCTCGGTGC
ACGAGCAGGACCCGCTGCCGGGCCTGCTGGAGAACATGGGGCTGCCCACCGTCCTCGCCGGCCGGCGCGCCCACGGCGAG
CCGCTCAGCCATGTCCGCGCCGACAACGAGGGCGGCGCCGCGGCGGCCGTCGCCCACCTGGTGGCCCGGGGGCGGCGCCG
GATCGCCACCATCAGCGGGCCCCTCGACATGGACGTGTCGCGCAGCCGCCTCGACGGCTGGCGGGACGCCCTGCGCGACG
AGGGCGTCGAGGCGGCGGAGACCCTGGTGGCCACCGCCGACTTCACCGAGGCCGGCGGCGAGTCCGCAATGCGTTCACTA
CTTGAACGTGATCCAGGTCTGGACGCGGTGTTCGCCGCCTCGGACGTCATGGCGGCCGGCGCGCTGGCGGAACTGCGCCG
CCAGGGCCGGCGGGTCCCCGACGACGTGGCGCTGATCGGCTTCGACGACTCCGTCATCGCCCGGCACAGCAACCCGCCCC
TCACCAGCGTGCGCCAGCCGGTCGAGGCGATCGGCCGCACGATGGCCCAGATCCTCCTGGCGGAGATCGACGACCCCGGA
CAGCCTCGGCAGCACGTCGTCCTGCCGACGGAACTCGTCGTACGGGAGTCCTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.817

100

0.37