Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KGQ53_RS06125 Genome accession   NZ_CP074120
Coordinates   1241204..1241833 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236204..1246833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGQ53_RS06110 helD 1236446..1238500 (-) 2055 WP_001295354.1 DNA helicase IV -
  KGQ53_RS06115 yccF 1238623..1239069 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KGQ53_RS06120 yccS 1239079..1241241 (+) 2163 WP_000875058.1 YccS family putative transporter -
  KGQ53_RS06125 sxy/tfoX 1241204..1241833 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KGQ53_RS06130 sulA 1242052..1242561 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KGQ53_RS06135 ompA 1242918..1243958 (+) 1041 WP_000750416.1 porin OmpA -
  KGQ53_RS06140 matP 1244034..1244486 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KGQ53_RS06145 ycbZ 1244672..1246432 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=563541 KGQ53_RS06125 WP_000839153.1 1241204..1241833(-) (sxy/tfoX) [Escherichia coli strain EC16]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=563541 KGQ53_RS06125 WP_000839153.1 1241204..1241833(-) (sxy/tfoX) [Escherichia coli strain EC16]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1