Detailed information NTG0056347

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAM5036_RS02000
• Genome accession: NC_020410
• Coordinates: 402603..403751 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis UCMB5036
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 397603..408751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAM5036_RS01980 (BAM5036_0356)	-	398001..398684 (-)	684	WP_015416808.1	ABC transporter ATP-binding protein	-
BAM5036_RS01985 (BAM5036_0357)	-	398699..400135 (-)	1437	WP_015416809.1	ABC transporter permease	-
BAM5036_RS01990 (BAM5036_0358)	-	400347..401030 (+)	684	WP_007410267.1	response regulator transcription factor	-
BAM5036_RS01995 (BAM5036_0359)	-	401017..402450 (+)	1434	WP_015416810.1	sensor histidine kinase	-
BAM5036_RS02000 (BAM5036_0360)	rapC	402603..403751 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
BAM5036_RS19660	phrC	403735..403854 (+)	120	WP_031378677.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BAM5036_RS19665	-	404003..404113 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
BAM5036_RS02010 (BAM5036_0362)	-	404193..405557 (-)	1365	WP_015416811.1	aspartate kinase	-
BAM5036_RS02015 (BAM5036_0364)	ceuB	405971..406924 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
BAM5036_RS02020 (BAM5036_0365)	-	406914..407861 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
BAM5036_RS02025 (BAM5036_0366)	-	407855..408613 (+)	759	WP_015416812.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=56347 BAM5036_RS02000 WP_007410270.1 402603..403751(+) (rapC) [Bacillus velezensis UCMB5036]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=56347 BAM5036_RS02000 WP_007410270.1 402603..403751(+) (rapC) [Bacillus velezensis UCMB5036]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGATTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568