Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   L6503_RS03715 Genome accession   NZ_CP091770
Coordinates   814122..815171 (+) Length   349 a.a.
NCBI ID   WP_237775294.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 809122..820171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS03700 (L6503_03700) - 810066..811270 (-) 1205 Protein_721 DUF874 family protein -
  L6503_RS03705 (L6503_03705) asd 811705..812745 (-) 1041 WP_237775292.1 aspartate-semialdehyde dehydrogenase -
  L6503_RS03710 (L6503_03710) hisS 812732..814060 (-) 1329 WP_237775293.1 histidine--tRNA ligase -
  L6503_RS03715 (L6503_03715) waaF 814122..815171 (+) 1050 WP_237775294.1 lipopolysaccharide heptosyltransferase II Regulator
  L6503_RS03720 (L6503_03720) - 815362..815580 (-) 219 WP_000744170.1 hypothetical protein -
  L6503_RS03725 (L6503_03725) fusA 816119..818197 (-) 2079 WP_237775295.1 elongation factor G -
  L6503_RS03730 (L6503_03730) rpsG 818209..818676 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  L6503_RS03735 (L6503_03735) rpsL 818692..819099 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39617.49 Da        Isoelectric Point: 9.5760

>NTDB_id=563434 L6503_RS03715 WP_237775294.1 814122..815171(+) (waaF) [Helicobacter pylori strain K115]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=563434 L6503_RS03715 WP_237775294.1 814122..815171(+) (waaF) [Helicobacter pylori strain K115]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGTTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAGCTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCCAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATTGTGTTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.081

98.567

0.375