Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   L6503_RS00825 Genome accession   NZ_CP091770
Coordinates   166194..167087 (-) Length   297 a.a.
NCBI ID   WP_212899840.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 161194..172087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS00800 (L6503_00800) - 162483..163219 (+) 737 Protein_158 hypothetical protein -
  L6503_RS00805 (L6503_00805) flhB 163306..164382 (-) 1077 WP_033582653.1 flagellar biosynthesis protein FlhB -
  L6503_RS00810 (L6503_00810) mobA 164375..164980 (-) 606 WP_237775786.1 molybdenum cofactor guanylyltransferase MobA -
  L6503_RS00815 (L6503_00815) - 165150..165907 (+) 758 Protein_161 GTP 3',8-cyclase MoaA -
  L6503_RS00820 (L6503_00820) - 166022..166192 (+) 171 WP_180448851.1 hypothetical protein -
  L6503_RS00825 (L6503_00825) pilA 166194..167087 (-) 894 WP_212899840.1 signal recognition particle-docking protein FtsY Machinery gene
  L6503_RS00830 (L6503_00830) - 167094..167651 (-) 558 WP_237775787.1 hypothetical protein -
  L6503_RS00835 (L6503_00835) - 167776..168423 (+) 648 WP_237775788.1 5-formyltetrahydrofolate cyclo-ligase -
  L6503_RS00840 (L6503_00840) rny 168401..169912 (+) 1512 WP_237776091.1 ribonuclease Y -
  L6503_RS00845 (L6503_00845) - 169913..171229 (-) 1317 WP_269089929.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33084.36 Da        Isoelectric Point: 6.9871

>NTDB_id=563424 L6503_RS00825 WP_212899840.1 166194..167087(-) (pilA) [Helicobacter pylori strain K115]
MFNFFKKIVNKIKGEEVKEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYYDK
TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSL
AYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV
IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=563424 L6503_RS00825 WP_212899840.1 166194..167087(-) (pilA) [Helicobacter pylori strain K115]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAGAGGCTAAAGAGAAAAAGCGCCA
AAGCGTTCCTAAAGAGGAATTAGAAGAAATTTTGATTGGCTTTGATATTCAATACGATTTGATAGAAAGCTTGCTAAATC
ATTTAGGCGATTTGATTACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTCGTGCGTGGGGAAAGCTATTATGATAAA
ACACGCCTAAAAACCATCACCACAAAACCCTTAGTGCATCTCATCGTGGGGGTTAATGGGGCGGGCAAAACCACAACGAT
CGCCAAACTCGCCAAACTCTCTTTAAAACAGCATAAAAAAACGCTTTTAGGGGCAGGCGATACCTTTAGAGCGGCCGCAG
TCAAACAGCTCCAATTATGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTA
GCTTATAACACCATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCA
GACCAACCTTAAAAACGAGCTTTCTAAGATCGCGCGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTATAAATTCC
TTATTTTAGACGGCACGCAAGGGAGTTCTGGGCTCACTCAAGCCAAGATTTTCCATGAGACTTTGGCGTTAGACGGCGTG
ATTATGACTAAGCTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTA
TTTAGGAATGGGCGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGATTTGGTTGATGCGGTGT
TTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(91-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.449

89.899

0.364