Detailed information NTG0563407

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: L6507_RS23125
• Genome accession: NZ_CP091756
• Coordinates: 4774561..4775586 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LC-1302-2020
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4769561..4780586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6507_RS23105 (L6507_23105)	metJ	4770622..4770939 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
L6507_RS23110 (L6507_23110)	yiiX	4771123..4771731 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
L6507_RS23115 (L6507_23115)	rpmE	4771792..4772004 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
L6507_RS23120 (L6507_23120)	priA	4772207..4774405 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
L6507_RS23125 (L6507_23125)	cytR	4774561..4775586 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
L6507_RS23130 (L6507_23130)	ftsN	4775678..4776637 (+)	960	WP_000068828.1	cell division protein FtsN	-
L6507_RS23135 (L6507_23135)	hslV	4776730..4777260 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
L6507_RS23140 (L6507_23140)	hslU	4777270..4778601 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
L6507_RS23145 (L6507_23145)	menA	4778668..4779594 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
L6507_RS23150 (L6507_23150)	rraA	4779687..4780172 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
L6507_RS23155 (L6507_23155)	zapB	4780257..4780502 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=563407 L6507_RS23125 WP_000644904.1 4774561..4775586(+) (cytR) [Escherichia coli strain LC-1302-2020]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=563407 L6507_RS23125 WP_000644904.1 4774561..4775586(+) (cytR) [Escherichia coli strain LC-1302-2020]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628