Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6507_RS09060 Genome accession   NZ_CP091756
Coordinates   1916904..1918331 (-) Length   475 a.a.
NCBI ID   WP_000980601.1    Uniprot ID   -
Organism   Escherichia coli strain LC-1302-2020     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1911904..1923331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6507_RS09030 (L6507_09030) yeeZ 1911959..1912783 (+) 825 WP_000754762.1 SDR family oxidoreductase -
  L6507_RS09035 (L6507_09035) yeeY 1912829..1913758 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  L6507_RS09040 (L6507_09040) yoeI 1913973..1914035 (+) 63 WP_010723108.1 membrane protein YoeI -
  L6507_RS09045 (L6507_09045) plaP 1914025..1915383 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6507_RS09050 (L6507_09050) tsuA 1915562..1916620 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  L6507_RS09055 (L6507_09055) tsuB 1916634..1916861 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6507_RS09060 (L6507_09060) sbcB 1916904..1918331 (-) 1428 WP_000980601.1 exodeoxyribonuclease I Machinery gene
  L6507_RS09065 (L6507_09065) dacD 1918540..1919706 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6507_RS09070 (L6507_09070) sbmC 1919825..1920298 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  L6507_RS09075 (L6507_09075) yeeA 1920497..1921555 (+) 1059 WP_001200891.1 FUSC family protein -
  L6507_RS09080 (L6507_09080) tmaR 1921727..1922056 (+) 330 WP_000450409.1 DUF496 family protein -
  L6507_RS09085 (L6507_09085) - 1922157..1922522 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54428.71 Da        Isoelectric Point: 5.4700

>NTDB_id=563370 L6507_RS09060 WP_000980601.1 1916904..1918331(-) (sbcB) [Escherichia coli strain LC-1302-2020]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=563370 L6507_RS09060 WP_000980601.1 1916904..1918331(-) (sbcB) [Escherichia coli strain LC-1302-2020]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583