Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JVI88_RS08485 Genome accession   NZ_CP074105
Coordinates   1756420..1758102 (-) Length   560 a.a.
NCBI ID   WP_002286651.1    Uniprot ID   A0A132P3G9
Organism   Enterococcus faecium strain VBO96     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751420..1763102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVI88_RS08455 (JVI88_08455) ftsL 1752694..1753095 (-) 402 WP_002294542.1 cell division protein FtsL -
  JVI88_RS08460 (JVI88_08460) rsmH 1753100..1754059 (-) 960 WP_002297994.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  JVI88_RS08465 (JVI88_08465) mraZ 1754080..1754511 (-) 432 WP_002297995.1 division/cell wall cluster transcriptional repressor MraZ -
  JVI88_RS08470 (JVI88_08470) - 1754681..1755049 (-) 369 WP_002327166.1 DUF3397 domain-containing protein -
  JVI88_RS08475 (JVI88_08475) - 1755220..1756176 (+) 957 WP_002324426.1 magnesium transporter CorA family protein -
  JVI88_RS08480 (JVI88_08480) - 1756249..1756365 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  JVI88_RS08485 (JVI88_08485) recN 1756420..1758102 (-) 1683 WP_002286651.1 DNA repair protein RecN Machinery gene
  JVI88_RS08490 (JVI88_08490) - 1758120..1758569 (-) 450 WP_002286653.1 arginine repressor -
  JVI88_RS08495 (JVI88_08495) - 1758676..1759494 (-) 819 WP_002286655.1 TlyA family RNA methyltransferase -
  JVI88_RS08500 (JVI88_08500) - 1759503..1760393 (-) 891 WP_002286656.1 polyprenyl synthetase family protein -
  JVI88_RS08505 (JVI88_08505) - 1760395..1760619 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  JVI88_RS08510 (JVI88_08510) xseA 1760624..1761961 (-) 1338 WP_002327168.1 exodeoxyribonuclease VII large subunit -
  JVI88_RS08515 (JVI88_08515) - 1761962..1762816 (-) 855 WP_002327169.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63377.82 Da        Isoelectric Point: 4.6049

>NTDB_id=563363 JVI88_RS08485 WP_002286651.1 1756420..1758102(-) (recN) [Enterococcus faecium strain VBO96]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCVLEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRRIGSYLVDIQGQNEHQELLQPESHLALLDRFGDVAFQQKKK
SYQQEYISYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVSELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDESRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLKLAKRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=563363 JVI88_RS08485 WP_002286651.1 1756420..1758102(-) (recN) [Enterococcus faecium strain VBO96]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATTATTATCGATGCTTTAGGTCTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGAGCAGAAAAATGCGTGCTTGAAGGGTTGTTTGAACTACCAAAACAAGAAGGATTCTCTGAACTGATG
GTTGAATTAGGGATCGAAACAGATGAGGACAATCTGATTGTTCGACGGGATATGTCCTTAACTGGAAAAAATGTTTGTCG
AGTGAATGGTCATATCATCACATTAGCTAATTTAAGAAGAATCGGCAGTTATTTAGTAGATATCCAAGGACAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGTAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATATCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGTTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGTGTTGGCTTGGCCGTTTCAGAACTGCAAGGGATCGCCCATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGCTGCAAGATGCAATCGGCGATATGAGTCGTCAGATTGATTTATTGG
AGTTAGATGAGAGTCGTTTAGAAGAAGTTACGCAACGTTTAGAATTAATCCGACAGTTGAAACGTAAATACGGCGAATCT
ATTGAGTCAATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTACATGAATTGAAAAGTCTGTATATGGAAAACACTGAGTTTGAGGTACGTTTCTTA
AAAGAAGAAAATAGACAATTGAATCATGATGGATTTGACCAAATCGAATTTTACATTACGACCAATCCAGGAGAGCCACT
GAAGCCTTTGGTGAAAGTCGCTTCTGGTGGCGAACTGTCTCGGATGTTGCTTGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATTTTTGATGAAGTGGATACAGGTGTGAGCGGAAGAGTTGCACAAGCCATCGCAGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTGCCTCAAGTTGCTGCAGTCGCCGACTATCAATATTA
TATTGTGAAAGCAGTGATTGATGGACGTACGCAAACTTCTGTTTCAGAGTTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGTATGCTGGCTGGAAGTGAGATTACAAAACTCACACTCGAACATGCAAAAGAACTATTGAAACTCGCAAAAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A132P3G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5