Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KFQ09_RS18645 Genome accession   NZ_CP074101
Coordinates   3612304..3612939 (-) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus sp. FS02     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3607304..3617939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS18625 - 3607671..3608375 (+) 705 WP_008344601.1 DnaD domain-containing protein -
  KFQ09_RS18630 nth 3608393..3609055 (+) 663 WP_008344602.1 endonuclease III -
  KFQ09_RS18635 - 3609052..3609561 (+) 510 WP_255835873.1 YpoC family protein -
  KFQ09_RS18640 - 3609597..3612284 (-) 2688 WP_025207532.1 PBP1A family penicillin-binding protein -
  KFQ09_RS18645 recU 3612304..3612939 (-) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  KFQ09_RS18650 - 3612986..3613942 (+) 957 WP_017359732.1 DUF2515 domain-containing protein -
  KFQ09_RS18655 sspM 3613965..3614069 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  KFQ09_RS18660 - 3614266..3614499 (+) 234 WP_231131595.1 DUF5446 family protein -
  KFQ09_RS18665 - 3614549..3614929 (+) 381 WP_225310452.1 YppE family protein -
  KFQ09_RS18670 - 3615038..3615490 (+) 453 WP_017359729.1 YppG family protein -
  KFQ09_RS18675 - 3615512..3615931 (-) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  KFQ09_RS18680 - 3616100..3616606 (+) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  KFQ09_RS18685 - 3616658..3617776 (-) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=563296 KFQ09_RS18645 WP_017359733.1 3612304..3612939(-) (recU) [Bacillus sp. FS02]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=563296 KFQ09_RS18645 WP_017359733.1 3612304..3612939(-) (recU) [Bacillus sp. FS02]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697