Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KFQ09_RS17165 Genome accession   NZ_CP074101
Coordinates   3349488..3350258 (+) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus sp. FS02     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3344488..3355258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS17135 - 3344794..3346908 (+) 2115 WP_370648338.1 HD family phosphohydrolase -
  KFQ09_RS17140 ybeY 3346909..3347388 (+) 480 WP_017358013.1 rRNA maturation RNase YbeY -
  KFQ09_RS17145 - 3347366..3347752 (+) 387 WP_076822228.1 diacylglycerol kinase family protein -
  KFQ09_RS17150 - 3347865..3348263 (+) 399 WP_008342410.1 cytidine deaminase -
  KFQ09_RS17155 era 3348256..3349161 (+) 906 WP_007501305.1 GTPase Era -
  KFQ09_RS17160 - 3349309..3349452 (+) 144 WP_008342408.1 YqzL family protein -
  KFQ09_RS17165 recO 3349488..3350258 (+) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  KFQ09_RS17170 glyQ 3350588..3351475 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  KFQ09_RS17175 glyS 3351468..3353513 (+) 2046 WP_255835840.1 glycine--tRNA ligase subunit beta -
  KFQ09_RS17180 - 3353680..3354318 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  KFQ09_RS17185 - 3354343..3355164 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=563290 KFQ09_RS17165 WP_007501304.1 3349488..3350258(+) (recO) [Bacillus sp. FS02]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=563290 KFQ09_RS17165 WP_007501304.1 3349488..3350258(+) (recO) [Bacillus sp. FS02]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758