Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KFQ09_RS02620 Genome accession   NZ_CP074101
Coordinates   517692..517970 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus sp. FS02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 512692..522970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS02605 - 514682..515350 (-) 669 WP_008345123.1 TrkA family potassium uptake protein -
  KFQ09_RS02610 - 515388..516230 (-) 843 WP_035700616.1 gamma-glutamylcyclotransferase -
  KFQ09_RS02615 - 516258..517547 (-) 1290 WP_007498613.1 ATP-binding protein -
  KFQ09_RS02620 abrB 517692..517970 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KFQ09_RS02625 mreBH 518247..519254 (+) 1008 WP_017359401.1 rod-share determining protein MreBH -
  KFQ09_RS02630 - 519329..519460 (+) 132 WP_003210922.1 protein YkpC -
  KFQ09_RS02635 - 519567..520799 (+) 1233 WP_035700613.1 aminopeptidase -
  KFQ09_RS02640 - 521334..522431 (-) 1098 WP_255836006.1 RES family NAD+ phosphorylase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=563242 KFQ09_RS02620 WP_017359400.1 517692..517970(-) (abrB) [Bacillus sp. FS02]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=563242 KFQ09_RS02620 WP_017359400.1 517692..517970(-) (abrB) [Bacillus sp. FS02]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGAGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543