Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KFQ09_RS00670 Genome accession   NZ_CP074101
Coordinates   129553..129933 (-) Length   126 a.a.
NCBI ID   WP_230677017.1    Uniprot ID   -
Organism   Bacillus sp. FS02     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 124553..134933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS00635 - 125142..125372 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  KFQ09_RS00640 - 125442..126089 (-) 648 WP_019744126.1 recombinase family protein -
  KFQ09_RS00645 yneA 126107..126418 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  KFQ09_RS00650 lexA 126578..127198 (+) 621 WP_035700932.1 transcriptional repressor LexA -
  KFQ09_RS00655 - 127246..127689 (-) 444 WP_008343821.1 hypothetical protein -
  KFQ09_RS00660 - 127986..128528 (+) 543 WP_008343822.1 IseA DL-endopeptidase inhibitor family protein -
  KFQ09_RS00665 - 128561..129409 (-) 849 WP_017367323.1 STAS domain-containing protein -
  KFQ09_RS00670 nucA/comI 129553..129933 (-) 381 WP_230677017.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KFQ09_RS00675 - 130161..132155 (-) 1995 WP_255835937.1 glycosyltransferase family 39 protein -
  KFQ09_RS00680 - 132300..133208 (-) 909 WP_217815802.1 serine protease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13818.48 Da        Isoelectric Point: 7.9019

>NTDB_id=563239 KFQ09_RS00670 WP_230677017.1 129553..129933(-) (nucA/comI) [Bacillus sp. FS02]
MGALLGGFGEDRFAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=563239 KFQ09_RS00670 WP_230677017.1 129553..129933(-) (nucA/comI) [Bacillus sp. FS02]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTTCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556