Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L59_RS08945 Genome accession   NZ_CP091704
Coordinates   1895717..1897144 (-) Length   475 a.a.
NCBI ID   WP_000980560.1    Uniprot ID   -
Organism   Escherichia coli strain KGu016     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1890717..1902144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L59_RS08915 (L6L59_08915) yeeZ 1890772..1891596 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  L6L59_RS08920 (L6L59_08920) yeeY 1891642..1892571 (+) 930 WP_032180084.1 LysR substrate-binding domain-containing protein -
  L6L59_RS08925 (L6L59_08925) yoeI 1892786..1892848 (+) 63 WP_010723108.1 membrane protein YoeI -
  L6L59_RS08930 (L6L59_08930) plaP 1892838..1894196 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L59_RS08935 (L6L59_08935) tsuA 1894375..1895433 (+) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L59_RS08940 (L6L59_08940) tsuB 1895447..1895674 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L59_RS08945 (L6L59_08945) sbcB 1895717..1897144 (-) 1428 WP_000980560.1 exodeoxyribonuclease I Machinery gene
  L6L59_RS08950 (L6L59_08950) dacD 1897353..1898519 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L59_RS08955 (L6L59_08955) sbmC 1898638..1899111 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  L6L59_RS08960 (L6L59_08960) yeeA 1899309..1900367 (+) 1059 WP_001200888.1 FUSC family protein -
  L6L59_RS08965 (L6L59_08965) tmaR 1900539..1900868 (+) 330 WP_000450409.1 DUF496 family protein -
  L6L59_RS08970 (L6L59_08970) - 1900969..1901151 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  L6L59_RS08975 (L6L59_08975) - 1901205..1901351 (+) 147 Protein_1760 transposase domain-containing protein -
  L6L59_RS08980 (L6L59_08980) - 1901640..1901720 (-) 81 Protein_1761 hypothetical protein -
  L6L59_RS08985 (L6L59_08985) yeeW 1901766..1901960 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54392.67 Da        Isoelectric Point: 5.3498

>NTDB_id=563199 L6L59_RS08945 WP_000980560.1 1895717..1897144(-) (sbcB) [Escherichia coli strain KGu016]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=563199 L6L59_RS08945 WP_000980560.1 1895717..1897144(-) (sbcB) [Escherichia coli strain KGu016]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCT
GAGCGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583