Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   L6L55_RS24850 Genome accession   NZ_CP091700
Coordinates   4865581..4866573 (+) Length   330 a.a.
NCBI ID   WP_072650737.1    Uniprot ID   -
Organism   Escherichia coli strain KFu019     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4860581..4871573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L55_RS24825 (L6L55_24820) rbsD 4860705..4861124 (+) 420 WP_001301979.1 D-ribose pyranase -
  L6L55_RS24830 (L6L55_24825) rbsA 4861132..4862637 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  L6L55_RS24835 (L6L55_24830) rbsC 4862642..4863607 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  L6L55_RS24840 (L6L55_24835) rbsB 4863632..4864522 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  L6L55_RS24845 (L6L55_24840) rbsK 4864648..4865577 (+) 930 WP_001300603.1 ribokinase -
  L6L55_RS24850 (L6L55_24845) cytR 4865581..4866573 (+) 993 WP_072650737.1 ribose operon transcriptional repressor RbsR Regulator
  L6L55_RS24855 (L6L55_24850) mdtD 4866539..4867966 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  L6L55_RS24860 (L6L55_24855) yieP 4867989..4868681 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2141

>NTDB_id=563081 L6L55_RS24850 WP_072650737.1 4865581..4866573(+) (cytR) [Escherichia coli strain KFu019]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAVDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=563081 L6L55_RS24850 WP_072650737.1 4865581..4866573(+) (cytR) [Escherichia coli strain KFu019]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGTGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCAGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGGTTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364