Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   L6L55_RS23365 Genome accession   NZ_CP091700
Coordinates   4559243..4560226 (-) Length   327 a.a.
NCBI ID   WP_001196486.1    Uniprot ID   A7ZT85
Organism   Escherichia coli strain KFu019     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4554243..4565226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L55_RS23330 (L6L55_23325) bcsG 4554649..4554822 (+) 174 Protein_4389 cellulose biosynthesis protein BcsG -
  L6L55_RS23335 (L6L55_23330) ldrD 4554909..4555016 (-) 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD -
  L6L55_RS23340 (L6L55_23335) - 4555392..4555499 (-) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  L6L55_RS23345 (L6L55_23340) - 4555875..4555982 (-) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  L6L55_RS23350 (L6L55_23345) - 4556358..4556465 (-) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  L6L55_RS23355 (L6L55_23350) yhjV 4556941..4558212 (+) 1272 WP_001295225.1 aromatic amino acid transport family protein -
  L6L55_RS23360 (L6L55_23355) dppF 4558242..4559246 (-) 1005 WP_000107012.1 dipeptide ABC transporter ATP-binding subunit DppF -
  L6L55_RS23365 (L6L55_23360) amiE 4559243..4560226 (-) 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein Regulator
  L6L55_RS23370 (L6L55_23365) dppC 4560237..4561139 (-) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  L6L55_RS23375 (L6L55_23370) dppB 4561149..4562168 (-) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  L6L55_RS25050 - 4562332..4562442 (+) 111 Protein_4399 hypothetical protein -
  L6L55_RS23385 (L6L55_23380) dppA 4562476..4564083 (-) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35844.36 Da        Isoelectric Point: 6.5814

>NTDB_id=563074 L6L55_RS23365 WP_001196486.1 4559243..4560226(-) (amiE) [Escherichia coli strain KFu019]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=563074 L6L55_RS23365 WP_001196486.1 4559243..4560226(-) (amiE) [Escherichia coli strain KFu019]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATTTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404