Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L55_RS15390 Genome accession   NZ_CP091700
Coordinates   2908385..2909812 (+) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli strain KFu019     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2903385..2914812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L55_RS15360 (L6L55_15360) pduU 2903781..2904131 (+) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -
  L6L55_RS15365 (L6L55_15365) - 2904136..2904579 (+) 444 WP_001564774.1 EutP/PduV family microcompartment system protein -
  L6L55_RS15370 (L6L55_15370) tmaR 2904680..2905009 (-) 330 WP_000450409.1 DUF496 family protein -
  L6L55_RS15375 (L6L55_15375) yeeA 2905181..2906239 (-) 1059 WP_001564775.1 FUSC family protein -
  L6L55_RS15380 (L6L55_15380) sbmC 2906438..2906911 (-) 474 WP_214142461.1 DNA gyrase inhibitor SbmC -
  L6L55_RS15385 (L6L55_15385) dacD 2907030..2908196 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L55_RS15390 (L6L55_15390) sbcB 2908385..2909812 (+) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  L6L55_RS15395 (L6L55_15395) tsuB 2909855..2910082 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L55_RS15400 (L6L55_15400) tsuA 2910096..2911154 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L55_RS15405 (L6L55_15405) plaP 2911333..2912691 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L55_RS15410 (L6L55_15410) yoeI 2912681..2912743 (-) 63 WP_010723108.1 membrane protein YoeI -
  L6L55_RS15415 (L6L55_15415) yeeY 2912958..2913887 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L6L55_RS15420 (L6L55_15420) yeeZ 2913933..2914757 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=563044 L6L55_RS15390 WP_000980620.1 2908385..2909812(+) (sbcB) [Escherichia coli strain KFu019]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=563044 L6L55_RS15390 WP_000980620.1 2908385..2909812(+) (sbcB) [Escherichia coli strain KFu019]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577