Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   KCI36_RS19510 Genome accession   NZ_CP074076
Coordinates   4165346..4165564 (-) Length   72 a.a.
NCBI ID   WP_075244225.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain AH28     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4160346..4170564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCI36_RS19490 (KCI36_19490) - 4161658..4162740 (+) 1083 WP_011408185.1 IS630 family transposase -
  KCI36_RS19495 (KCI36_19495) - 4162752..4163375 (-) 624 WP_011258513.1 GNAT family N-acetyltransferase -
  KCI36_RS19500 (KCI36_19500) - 4163626..4164102 (-) 477 WP_011258512.1 chemotaxis protein CheW -
  KCI36_RS19505 (KCI36_19505) - 4164136..4165338 (-) 1203 WP_011408184.1 chemotaxis protein CheB -
  KCI36_RS19510 (KCI36_19510) chpA 4165346..4165564 (-) 219 WP_075244225.1 response regulator Regulator

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8397.81 Da        Isoelectric Point: 10.5108

>NTDB_id=563035 KCI36_RS19510 WP_075244225.1 4165346..4165564(-) (chpA) [Xanthomonas oryzae strain AH28]
MPRMDGYELATAMRADPRFKAVPIVMITSRSGEKHRQRAFQIGVQRYLGKPYQELDLMRNVYDLLGIARVRD

Nucleotide


Download         Length: 219 bp        

>NTDB_id=563035 KCI36_RS19510 WP_075244225.1 4165346..4165564(-) (chpA) [Xanthomonas oryzae strain AH28]
ATGCCGCGCATGGACGGCTACGAACTGGCGACCGCGATGCGTGCCGACCCGCGCTTCAAGGCGGTGCCGATCGTGATGAT
CACCTCGCGCAGTGGCGAAAAGCATCGCCAGCGTGCCTTCCAGATCGGCGTGCAGCGTTACCTGGGCAAGCCTTACCAGG
AGTTGGATCTGATGCGAAACGTGTATGACCTGCTGGGGATCGCCCGTGTCCGAGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

53.846

90.278

0.486