Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H175_RS21100 Genome accession   NC_020376
Coordinates   4187327..4189066 (-) Length   579 a.a.
NCBI ID   WP_000947734.1    Uniprot ID   A0A9X5W4K1
Organism   Bacillus thuringiensis serovar thuringiensis str. IS5056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4182327..4194066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H175_RS21070 (H175_ch4250) - 4182565..4182798 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  H175_RS21075 (H175_ch4251) - 4182848..4183576 (-) 729 WP_000172589.1 glycerophosphodiester phosphodiesterase -
  H175_RS21080 (H175_ch4252) - 4183627..4183773 (+) 147 WP_001247671.1 YycC family protein -
  H175_RS21085 (H175_ch4253) - 4184013..4184576 (-) 564 WP_000790987.1 PRK06770 family protein -
  H175_RS21090 (H175_ch4254) spo0A 4184828..4185622 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  H175_RS21095 (H175_ch4255) spoIVB 4185910..4187208 (-) 1299 WP_015055189.1 SpoIVB peptidase -
  H175_RS21100 (H175_ch4256) recN 4187327..4189066 (-) 1740 WP_000947734.1 DNA repair protein RecN Machinery gene
  H175_RS21105 (H175_ch4257) argR 4189331..4189780 (-) 450 WP_001032580.1 arginine repressor ArgR -
  H175_RS21110 (H175_ch4258) - 4189923..4190762 (-) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  H175_RS21115 (H175_ch4259) dxs 4190766..4192658 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  H175_RS21120 (H175_ch4260) ispA 4192960..4193850 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65839.94 Da        Isoelectric Point: 4.8260

>NTDB_id=56301 H175_RS21100 WP_000947734.1 4187327..4189066(-) (recN) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=56301 H175_RS21100 WP_000947734.1 4187327..4189066(-) (recN) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTGTTTTATGTTGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAGAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAAGCTGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCATTAGGTGATGCATATCGTTCATTGAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATCATGATTCAATTGCAAATAGCTATTACTTGTTAGAAGAGGTTGCATATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAAGAAATATTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATCCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCGACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCTGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACGGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment