Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   H175_RS20175 Genome accession   NC_020376
Coordinates   4018447..4018905 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar thuringiensis str. IS5056     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4013447..4023905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H175_RS20160 (H175_ch4063) - 4014116..4014352 (+) 237 WP_000283738.1 hypothetical protein -
  H175_RS20165 (H175_ch4064) - 4014514..4016622 (-) 2109 WP_000421679.1 polyphosphate kinase -
  H175_RS20170 (H175_ch4065) - 4016731..4018305 (-) 1575 WP_003271474.1 Ppx/GppA family phosphatase -
  H175_RS20175 (H175_ch4066) kre 4018447..4018905 (+) 459 WP_000804864.1 YkyB family protein Regulator
  H175_RS20180 (H175_ch4067) - 4018937..4019599 (-) 663 WP_000922469.1 YkyA family protein -
  H175_RS20185 (H175_ch4068) - 4020213..4020866 (-) 654 WP_000680816.1 diguanylate cyclase -
  H175_RS20190 (H175_ch4069) - 4021030..4021263 (+) 234 WP_000939446.1 SPP1 phage holin family protein -
  H175_RS20195 (H175_ch4070) - 4021295..4021795 (-) 501 WP_000708123.1 hypothetical protein -
  H175_RS20200 (H175_ch4071) - 4022206..4023747 (+) 1542 WP_000449905.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=56298 H175_RS20175 WP_000804864.1 4018447..4018905(+) (kre) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=56298 H175_RS20175 WP_000804864.1 4018447..4018905(+) (kre) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment