Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU78_RS13705 Genome accession   NZ_CP074047
Coordinates   2835476..2836105 (-) Length   209 a.a.
NCBI ID   WP_222898768.1    Uniprot ID   -
Organism   Escherichia coli strain PD7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2830476..2841105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU78_RS13690 (KFU78_13575) helD 2830718..2832772 (-) 2055 WP_001295354.1 DNA helicase IV -
  KFU78_RS13695 (KFU78_13580) yccF 2832895..2833341 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU78_RS13700 (KFU78_13585) yccS 2833351..2835513 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KFU78_RS13705 (KFU78_13590) sxy/tfoX 2835476..2836105 (-) 630 WP_222898768.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU78_RS13710 (KFU78_13595) sulA 2836324..2836833 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFU78_RS13715 (KFU78_13600) ompA 2837190..2838230 (+) 1041 WP_000750416.1 porin OmpA -
  KFU78_RS13720 (KFU78_13605) matP 2838306..2838758 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU78_RS13725 (KFU78_13610) ycbZ 2838944..2840704 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=562968 KFU78_RS13705 WP_222898768.1 2835476..2836105(-) (sxy/tfoX) [Escherichia coli strain PD7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRGCEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562968 KFU78_RS13705 WP_222898768.1 2835476..2836105(-) (sxy/tfoX) [Escherichia coli strain PD7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGGTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995