Detailed information NTG0562963

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: L6L65_RS16415
• Genome accession: NZ_CP091691
• Coordinates: 3391531..3392556 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain KMi006
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3386531..3397556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6L65_RS16395 (L6L65_16395)	metJ	3387592..3387909 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
L6L65_RS16400 (L6L65_16400)	yiiX	3388093..3388701 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
L6L65_RS16405 (L6L65_16405)	rpmE	3388762..3388974 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
L6L65_RS16410 (L6L65_16410)	priA	3389177..3391375 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
L6L65_RS16415 (L6L65_16415)	cytR	3391531..3392556 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
L6L65_RS16420 (L6L65_16420)	ftsN	3392648..3393607 (+)	960	WP_000068828.1	cell division protein FtsN	-
L6L65_RS16425 (L6L65_16425)	hslV	3393700..3394230 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
L6L65_RS16430 (L6L65_16430)	hslU	3394240..3395571 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
L6L65_RS16435 (L6L65_16435)	menA	3395638..3396564 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
L6L65_RS16440 (L6L65_16440)	rraA	3396657..3397142 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
L6L65_RS16445 (L6L65_16445)	zapB	3397227..3397472 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=562963 L6L65_RS16415 WP_000644904.1 3391531..3392556(+) (cytR) [Escherichia coli strain KMi006]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=562963 L6L65_RS16415 WP_000644904.1 3391531..3392556(+) (cytR) [Escherichia coli strain KMi006]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628