Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H175_RS12335 Genome accession   NC_020376
Coordinates   2423401..2423679 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis serovar thuringiensis str. IS5056     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2418401..2428679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H175_RS12315 (H175_ch2441) - 2419150..2419752 (+) 603 WP_000517270.1 hypothetical protein -
  H175_RS12320 (H175_ch2442) - 2420057..2421238 (+) 1182 WP_000724490.1 agmatine deiminase family protein -
  H175_RS12325 (H175_ch2444) - 2421755..2422006 (-) 252 WP_000827555.1 LuxR C-terminal-related transcriptional regulator -
  H175_RS12330 (H175_ch2445) - 2422382..2423260 (+) 879 WP_000397973.1 helix-turn-helix domain-containing protein -
  H175_RS12335 (H175_ch2446) abrB 2423401..2423679 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H175_RS12340 (H175_ch2447) - 2424204..2425454 (+) 1251 WP_001032615.1 hypothetical protein -
  H175_RS12345 (H175_ch2448) - 2425522..2426280 (+) 759 WP_000347983.1 TSUP family transporter -
  H175_RS12350 (H175_ch2449) - 2426533..2427192 (+) 660 WP_000876934.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=56293 H175_RS12335 WP_000842216.1 2423401..2423679(+) (abrB) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=56293 H175_RS12335 WP_000842216.1 2423401..2423679(+) (abrB) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment