Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU67_RS09245 Genome accession   NZ_CP074031
Coordinates   1957402..1958031 (+) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain PK12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952402..1963031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU67_RS09225 (KFU67_09150) ycbZ 1952790..1954550 (-) 1761 WP_000156477.1 Lon protease family protein -
  KFU67_RS09230 (KFU67_09155) matP 1954736..1955188 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU67_RS09235 (KFU67_09160) ompA 1955266..1956318 (-) 1053 WP_001346420.1 porin OmpA -
  KFU67_RS09240 (KFU67_09165) sulA 1956675..1957184 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  KFU67_RS09245 (KFU67_09170) sxy/tfoX 1957402..1958031 (+) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU67_RS09250 (KFU67_09175) yccS 1957994..1960156 (-) 2163 WP_000875039.1 YccS family putative transporter -
  KFU67_RS09255 (KFU67_09180) yccF 1960166..1960612 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KFU67_RS09260 (KFU67_09185) helD 1960735..1962789 (+) 2055 WP_001361412.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=562899 KFU67_RS09245 WP_000839133.1 1957402..1958031(+) (sxy/tfoX) [Escherichia coli strain PK12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562899 KFU67_RS09245 WP_000839133.1 1957402..1958031(+) (sxy/tfoX) [Escherichia coli strain PK12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995