Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L66_RS13360 Genome accession   NZ_CP091677
Coordinates   2687174..2688601 (+) Length   475 a.a.
NCBI ID   WP_074150700.1    Uniprot ID   -
Organism   Escherichia coli strain KFu022     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2682174..2693601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L66_RS13320 (L6L66_13320) yeeW 2682358..2682552 (+) 195 WP_000988600.1 DUF5983 family protein -
  L6L66_RS13325 (L6L66_13325) - 2682598..2682678 (+) 81 Protein_2615 hypothetical protein -
  L6L66_RS13330 (L6L66_13330) - 2682967..2683113 (-) 147 Protein_2616 transposase domain-containing protein -
  L6L66_RS13335 (L6L66_13335) - 2683164..2683349 (+) 186 Protein_2617 EutP/PduV family microcompartment system protein -
  L6L66_RS13340 (L6L66_13340) tmaR 2683450..2683779 (-) 330 WP_000450409.1 DUF496 family protein -
  L6L66_RS13345 (L6L66_13345) yeeA 2683951..2685009 (-) 1059 WP_001200891.1 FUSC family protein -
  L6L66_RS13350 (L6L66_13350) sbmC 2685207..2685680 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  L6L66_RS13355 (L6L66_13355) dacD 2685799..2686965 (-) 1167 WP_172698609.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L66_RS13360 (L6L66_13360) sbcB 2687174..2688601 (+) 1428 WP_074150700.1 exodeoxyribonuclease I Machinery gene
  L6L66_RS13365 (L6L66_13365) tsuB 2688644..2688871 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L66_RS13370 (L6L66_13370) tsuA 2688885..2689943 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L66_RS13375 (L6L66_13375) plaP 2690122..2691480 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L66_RS13380 (L6L66_13380) yoeI 2691470..2691532 (-) 63 WP_010723108.1 membrane protein YoeI -
  L6L66_RS13385 (L6L66_13385) yeeY 2691747..2692676 (-) 930 WP_032177447.1 LysR substrate-binding domain-containing protein -
  L6L66_RS13390 (L6L66_13390) yeeZ 2692722..2693546 (-) 825 WP_000754752.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4700

>NTDB_id=562790 L6L66_RS13360 WP_074150700.1 2687174..2688601(+) (sbcB) [Escherichia coli strain KFu022]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=562790 L6L66_RS13360 WP_074150700.1 2687174..2688601(+) (sbcB) [Escherichia coli strain KFu022]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583