Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H175_RS00195 Genome accession   NC_020376
Coordinates   40390..40674 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar thuringiensis str. IS5056     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35390..45674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H175_RS00160 (H175_ch0025) tmk 35582..36208 (+) 627 WP_000677220.1 dTMP kinase -
  H175_RS00165 (H175_ch0026) holB 36244..37227 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  H175_RS00170 (H175_ch0027) - 37233..38060 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  H175_RS00175 (H175_ch0028) yabA 38075..38425 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  H175_RS00180 (H175_ch0029) - 38508..39248 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H175_RS00185 (H175_ch0030) - 39235..39525 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  H175_RS00190 (H175_ch0031) rsmI 39494..40369 (+) 876 WP_000267825.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H175_RS00195 (H175_ch0032) abrB 40390..40674 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H175_RS00200 (H175_ch0033) metG 41135..43144 (+) 2010 WP_080546043.1 methionine--tRNA ligase -
  H175_RS00205 (H175_ch0034) - 43311..44078 (+) 768 WP_000895840.1 TatD family hydrolase -
  H175_RS00210 (H175_ch0035) rnmV 44294..44851 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=56272 H175_RS00195 WP_000843036.1 40390..40674(-) (abrB) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=56272 H175_RS00195 WP_000843036.1 40390..40674(-) (abrB) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment