Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L68_RS14350 Genome accession   NZ_CP091673
Coordinates   2702480..2703907 (+) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain KKo009     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2697480..2708907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L68_RS14310 (L6L68_14310) yeeW 2697664..2697858 (+) 195 WP_000988600.1 DUF5983 family protein -
  L6L68_RS14315 (L6L68_14315) - 2697904..2697984 (+) 81 Protein_2579 hypothetical protein -
  L6L68_RS25395 - 2698273..2698446 (-) 174 WP_071592185.1 transposase domain-containing protein -
  L6L68_RS25400 - 2698473..2698655 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  L6L68_RS14330 (L6L68_14330) tmaR 2698756..2699085 (-) 330 WP_000450409.1 DUF496 family protein -
  L6L68_RS14335 (L6L68_14335) yeeA 2699257..2700315 (-) 1059 WP_196111087.1 FUSC family protein -
  L6L68_RS14340 (L6L68_14340) sbmC 2700513..2700986 (-) 474 WP_001394439.1 DNA gyrase inhibitor SbmC -
  L6L68_RS14345 (L6L68_14345) dacD 2701105..2702271 (-) 1167 WP_103743115.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L68_RS14350 (L6L68_14350) sbcB 2702480..2703907 (+) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  L6L68_RS14355 (L6L68_14355) tsuB 2703950..2704177 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L68_RS14360 (L6L68_14360) tsuA 2704191..2705249 (-) 1059 WP_024187793.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L68_RS14365 (L6L68_14365) plaP 2705428..2706786 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L68_RS14370 (L6L68_14370) yoeI 2706776..2706838 (-) 63 WP_010723108.1 membrane protein YoeI -
  L6L68_RS14375 (L6L68_14375) yeeY 2707053..2707982 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L6L68_RS14380 (L6L68_14380) yeeZ 2708028..2708852 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=562706 L6L68_RS14350 WP_000980570.1 2702480..2703907(+) (sbcB) [Escherichia coli strain KKo009]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=562706 L6L68_RS14350 WP_000980570.1 2702480..2703907(+) (sbcB) [Escherichia coli strain KKo009]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581