Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU65_RS13915 Genome accession   NZ_CP073988
Coordinates   2831683..2832312 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MB10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826683..2837312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU65_RS13900 (KFU65_13785) helD 2826925..2828979 (-) 2055 WP_000420536.1 DNA helicase IV -
  KFU65_RS13905 (KFU65_13790) yccF 2829102..2829548 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU65_RS13910 (KFU65_13795) yccS 2829558..2831720 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KFU65_RS13915 (KFU65_13800) sxy/tfoX 2831683..2832312 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU65_RS13920 (KFU65_13805) sulA 2832531..2833040 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  KFU65_RS13925 (KFU65_13810) ompA 2833397..2834449 (+) 1053 WP_001361736.1 porin OmpA -
  KFU65_RS13930 (KFU65_13815) matP 2834525..2834977 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU65_RS13935 (KFU65_13820) ycbZ 2835163..2836923 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=562679 KFU65_RS13915 WP_000839153.1 2831683..2832312(-) (sxy/tfoX) [Escherichia coli strain MB10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562679 KFU65_RS13915 WP_000839153.1 2831683..2832312(-) (sxy/tfoX) [Escherichia coli strain MB10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1