Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU84_RS22240 Genome accession   NZ_CP073981
Coordinates   4585333..4585962 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MB19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4580333..4590962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU84_RS22225 (KFU84_22050) helD 4580575..4582629 (-) 2055 WP_000420536.1 DNA helicase IV -
  KFU84_RS22230 (KFU84_22055) yccF 4582752..4583198 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU84_RS22235 (KFU84_22060) yccS 4583208..4585370 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KFU84_RS22240 (KFU84_22065) sxy/tfoX 4585333..4585962 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU84_RS22245 (KFU84_22070) sulA 4586181..4586690 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFU84_RS22250 (KFU84_22075) ompA 4587047..4588087 (+) 1041 WP_000750416.1 porin OmpA -
  KFU84_RS22255 (KFU84_22080) matP 4588163..4588615 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU84_RS22260 (KFU84_22085) ycbZ 4588801..4590561 (+) 1761 WP_000156514.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=562644 KFU84_RS22240 WP_000839153.1 4585333..4585962(-) (sxy/tfoX) [Escherichia coli strain MB19]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562644 KFU84_RS22240 WP_000839153.1 4585333..4585962(-) (sxy/tfoX) [Escherichia coli strain MB19]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1