Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L56_RS09550 Genome accession   NZ_CP091664
Coordinates   1999697..2001124 (-) Length   475 a.a.
NCBI ID   WP_089502654.1    Uniprot ID   -
Organism   Escherichia coli strain KKa019     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994697..2006124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L56_RS09520 (L6L56_09520) yeeZ 1994752..1995576 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  L6L56_RS09525 (L6L56_09525) yeeY 1995622..1996551 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  L6L56_RS09530 (L6L56_09530) yoeI 1996766..1996828 (+) 63 WP_010723108.1 membrane protein YoeI -
  L6L56_RS09535 (L6L56_09535) plaP 1996818..1998176 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L56_RS09540 (L6L56_09540) tsuA 1998355..1999413 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L56_RS09545 (L6L56_09545) tsuB 1999427..1999654 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L56_RS09550 (L6L56_09550) sbcB 1999697..2001124 (-) 1428 WP_089502654.1 exodeoxyribonuclease I Machinery gene
  L6L56_RS09555 (L6L56_09555) dacD 2001333..2002499 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L56_RS09560 (L6L56_09560) sbmC 2002618..2003091 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  L6L56_RS09565 (L6L56_09565) yeeA 2003289..2004347 (+) 1059 WP_001200890.1 FUSC family protein -
  L6L56_RS09570 (L6L56_09570) tmaR 2004519..2004848 (+) 330 WP_000450409.1 DUF496 family protein -
  L6L56_RS09575 (L6L56_09575) - 2004949..2005131 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  L6L56_RS09580 (L6L56_09580) - 2005185..2005331 (+) 147 Protein_1882 transposase domain-containing protein -
  L6L56_RS09585 (L6L56_09585) - 2005620..2005700 (-) 81 Protein_1883 hypothetical protein -
  L6L56_RS09590 (L6L56_09590) yeeW 2005746..2005940 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.87 Da        Isoelectric Point: 5.7523

>NTDB_id=562539 L6L56_RS09550 WP_089502654.1 1999697..2001124(-) (sbcB) [Escherichia coli strain KKa019]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRKNPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=562539 L6L56_RS09550 WP_089502654.1 1999697..2001124(-) (sbcB) [Escherichia coli strain KKa019]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTAAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581