Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU88_RS14850 Genome accession   NZ_CP073958
Coordinates   2982119..2982748 (-) Length   209 a.a.
NCBI ID   WP_176245301.1    Uniprot ID   -
Organism   Escherichia coli strain MB46     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2977119..2987748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU88_RS14835 (KFU88_14650) helD 2977361..2979415 (-) 2055 WP_001295354.1 DNA helicase IV -
  KFU88_RS14840 (KFU88_14655) yccF 2979538..2979984 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU88_RS14845 (KFU88_14660) yccS 2979994..2982156 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KFU88_RS14850 (KFU88_14665) sxy/tfoX 2982119..2982748 (-) 630 WP_176245301.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU88_RS14855 (KFU88_14670) sulA 2982967..2983476 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFU88_RS14860 (KFU88_14675) ompA 2983833..2984873 (+) 1041 WP_001400178.1 porin OmpA -
  KFU88_RS14865 (KFU88_14680) matP 2984949..2985401 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU88_RS14870 (KFU88_14685) ycbZ 2985587..2987347 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=562525 KFU88_RS14850 WP_176245301.1 2982119..2982748(-) (sxy/tfoX) [Escherichia coli strain MB46]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKNLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562525 KFU88_RS14850 WP_176245301.1 2982119..2982748(-) (sxy/tfoX) [Escherichia coli strain MB46]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAAATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995