Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU75_RS13825 Genome accession   NZ_CP073949
Coordinates   2827942..2828571 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MB50     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2822942..2833571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU75_RS13810 (KFU75_13715) helD 2823184..2825238 (-) 2055 WP_000420536.1 DNA helicase IV -
  KFU75_RS13815 (KFU75_13720) yccF 2825361..2825807 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU75_RS13820 (KFU75_13725) yccS 2825817..2827979 (+) 2163 WP_123010355.1 YccS family putative transporter -
  KFU75_RS13825 (KFU75_13730) sxy/tfoX 2827942..2828571 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU75_RS13830 (KFU75_13735) sulA 2828790..2829299 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  KFU75_RS13835 (KFU75_13740) ompA 2829656..2830708 (+) 1053 WP_001361736.1 porin OmpA -
  KFU75_RS13840 (KFU75_13745) matP 2830784..2831236 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU75_RS13845 (KFU75_13750) ycbZ 2831422..2833182 (+) 1761 WP_257186195.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=562481 KFU75_RS13825 WP_000839153.1 2827942..2828571(-) (sxy/tfoX) [Escherichia coli strain MB50]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562481 KFU75_RS13825 WP_000839153.1 2827942..2828571(-) (sxy/tfoX) [Escherichia coli strain MB50]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1