Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU83_RS13675 Genome accession   NZ_CP073939
Coordinates   2805253..2805882 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MB53     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2800253..2810882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU83_RS13660 (KFU83_13580) helD 2800495..2802549 (-) 2055 WP_001295354.1 DNA helicase IV -
  KFU83_RS13665 (KFU83_13585) yccF 2802672..2803118 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU83_RS13670 (KFU83_13590) yccS 2803128..2805290 (+) 2163 WP_000875044.1 YccS family putative transporter -
  KFU83_RS13675 (KFU83_13595) sxy/tfoX 2805253..2805882 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU83_RS13680 (KFU83_13600) sulA 2806101..2806610 (+) 510 WP_257188055.1 SOS-induced cell division inhibitor SulA -
  KFU83_RS13685 (KFU83_13605) ompA 2806967..2808007 (+) 1041 WP_000750416.1 porin OmpA -
  KFU83_RS13690 (KFU83_13610) matP 2808083..2808535 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU83_RS13695 (KFU83_13615) ycbZ 2808721..2810481 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=562415 KFU83_RS13675 WP_000839153.1 2805253..2805882(-) (sxy/tfoX) [Escherichia coli strain MB53]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562415 KFU83_RS13675 WP_000839153.1 2805253..2805882(-) (sxy/tfoX) [Escherichia coli strain MB53]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1