Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L61_RS19345 Genome accession   NZ_CP091659
Coordinates   3850981..3852408 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain KFu024     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3845981..3857408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L61_RS19315 (L6L61_19300) yeeZ 3846036..3846860 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  L6L61_RS19320 (L6L61_19305) yeeY 3846906..3847835 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  L6L61_RS19325 (L6L61_19310) yoeI 3848050..3848112 (+) 63 WP_010723108.1 membrane protein YoeI -
  L6L61_RS19330 (L6L61_19315) plaP 3848102..3849460 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L61_RS19335 (L6L61_19320) tsuA 3849639..3850697 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L61_RS19340 (L6L61_19325) tsuB 3850711..3850938 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L61_RS19345 (L6L61_19330) sbcB 3850981..3852408 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  L6L61_RS19350 (L6L61_19335) dacD 3852617..3853783 (+) 1167 WP_024198359.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L61_RS19355 (L6L61_19340) sbmC 3853902..3854375 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  L6L61_RS19360 (L6L61_19345) yeeA 3854573..3855631 (+) 1059 WP_001200895.1 FUSC family protein -
  L6L61_RS19365 (L6L61_19350) tmaR 3855803..3856132 (+) 330 WP_000450409.1 DUF496 family protein -
  L6L61_RS19370 (L6L61_19355) - 3856233..3856598 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  L6L61_RS19375 (L6L61_19360) - 3856869..3857258 (-) 390 WP_102804527.1 transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=562409 L6L61_RS19345 WP_000980605.1 3850981..3852408(-) (sbcB) [Escherichia coli strain KFu024]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=562409 L6L61_RS19345 WP_000980605.1 3850981..3852408(-) (sbcB) [Escherichia coli strain KFu024]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579