Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU62_RS13855 Genome accession   NZ_CP073932
Coordinates   2854383..2855012 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MB57     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2849383..2860012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU62_RS13840 (KFU62_13720) helD 2849625..2851679 (-) 2055 WP_001295354.1 DNA helicase IV -
  KFU62_RS13845 (KFU62_13725) yccF 2851802..2852248 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU62_RS13850 (KFU62_13730) yccS 2852258..2854420 (+) 2163 WP_000875058.1 YccS family putative transporter -
  KFU62_RS13855 (KFU62_13735) sxy/tfoX 2854383..2855012 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU62_RS13860 (KFU62_13740) sulA 2855231..2855740 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFU62_RS13865 (KFU62_13745) ompA 2856097..2857137 (+) 1041 WP_001400178.1 porin OmpA -
  KFU62_RS13870 (KFU62_13750) matP 2857213..2857665 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFU62_RS13875 (KFU62_13755) ycbZ 2857851..2859611 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=562371 KFU62_RS13855 WP_000839153.1 2854383..2855012(-) (sxy/tfoX) [Escherichia coli strain MB57]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562371 KFU62_RS13855 WP_000839153.1 2854383..2855012(-) (sxy/tfoX) [Escherichia coli strain MB57]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1