Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KFU60_RS11425 Genome accession   NZ_CP073916
Coordinates   2379750..2381549 (-) Length   599 a.a.
NCBI ID   WP_108299062.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. tolerans strain 2A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374750..2386549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU60_RS11395 (KFU60_11395) - 2374840..2375871 (+) 1032 WP_016380987.1 hypothetical protein -
  KFU60_RS11400 (KFU60_11400) - 2376024..2376368 (+) 345 WP_003563007.1 hypothetical protein -
  KFU60_RS11405 (KFU60_11405) - 2376442..2377161 (+) 720 WP_003563009.1 ATP-binding cassette domain-containing protein -
  KFU60_RS11410 (KFU60_11410) - 2377158..2377955 (+) 798 WP_003563011.1 metal ABC transporter permease -
  KFU60_RS11415 (KFU60_11415) - 2378027..2378875 (-) 849 WP_003592820.1 metallophosphoesterase family protein -
  KFU60_RS11420 (KFU60_11420) - 2378872..2379753 (-) 882 WP_011674025.1 NAD(P)-dependent oxidoreductase -
  KFU60_RS11425 (KFU60_11425) pepF 2379750..2381549 (-) 1800 WP_108299062.1 oligoendopeptidase F Regulator
  KFU60_RS11430 (KFU60_11430) - 2381678..2382772 (+) 1095 WP_003592824.1 LCP family protein -
  KFU60_RS11435 (KFU60_11435) brnQ 2382923..2384302 (-) 1380 WP_003573173.1 branched-chain amino acid transport system II carrier protein -
  KFU60_RS11440 (KFU60_11440) - 2384517..2385932 (+) 1416 WP_003600251.1 IS5-like element ISLca2 family transposase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67194.32 Da        Isoelectric Point: 5.7427

>NTDB_id=562288 KFU60_RS11425 WP_108299062.1 2379750..2381549(-) (pepF) [Lacticaseibacillus paracasei subsp. tolerans strain 2A]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIAS
AGDALNASHATFNVLNNSDLQFGFVANEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEEILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=562288 KFU60_RS11425 WP_108299062.1 2379750..2381549(-) (pepF) [Lacticaseibacillus paracasei subsp. tolerans strain 2A]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACTGAATTGACATGGGATCTCACGACCATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCGCCTG
AAGCACTTGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAAGACACTGGCAATGCAGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCCGCTGATCTTGCCAGCCA
ATTAGCGTTCATGGATCCGGAAATTCTGGCGATTCCAGCCGATCAGTTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGTCACTTTATTGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGCGGCTGAGTCATTAATTGCTAGT
GCTGGGGATGCGCTGAATGCCAGTCATGCAACCTTTAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGCAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGCCAACTCATTCGGTCAACAAATCGCAAGCTGCGTAAAG
ACGCGTTTGAGGCTTTGCTGCGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTAAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCTCGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACACTGCTTGATCAAGTCAACGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATTCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGTGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTATACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGGCTCAATTTGCTGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCT
ACCAGCATGTCCTCCTATTATGCGGATCTGAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATCGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTT
TGGCCGCTGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCAATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAACCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAGAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.165

0.513