Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L63_RS03935 Genome accession   NZ_CP091652
Coordinates   757686..759113 (+) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli strain KMi025     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752686..764113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L63_RS03895 (L6L63_03895) yeeW 752870..753064 (+) 195 WP_000988600.1 DUF5983 family protein -
  L6L63_RS03900 (L6L63_03900) - 753110..753190 (+) 81 Protein_763 hypothetical protein -
  L6L63_RS03905 (L6L63_03905) - 753479..753625 (-) 147 Protein_764 transposase domain-containing protein -
  L6L63_RS03910 (L6L63_03910) - 753679..753861 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  L6L63_RS03915 (L6L63_03915) tmaR 753962..754291 (-) 330 WP_000450409.1 DUF496 family protein -
  L6L63_RS03920 (L6L63_03920) yeeA 754463..755521 (-) 1059 WP_001200905.1 FUSC family protein -
  L6L63_RS03925 (L6L63_03925) sbmC 755719..756192 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  L6L63_RS03930 (L6L63_03930) dacD 756311..757477 (-) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L63_RS03935 (L6L63_03935) sbcB 757686..759113 (+) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  L6L63_RS03940 (L6L63_03940) tsuB 759156..759383 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L63_RS03945 (L6L63_03945) tsuA 759397..760455 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L63_RS03950 (L6L63_03950) plaP 760634..761992 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L63_RS03955 (L6L63_03955) yoeI 761982..762044 (-) 63 WP_010723108.1 membrane protein YoeI -
  L6L63_RS03960 (L6L63_03960) yeeY 762259..763188 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L6L63_RS03965 (L6L63_03965) yeeZ 763234..764058 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=562274 L6L63_RS03935 WP_000980568.1 757686..759113(+) (sbcB) [Escherichia coli strain KMi025]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=562274 L6L63_RS03935 WP_000980568.1 757686..759113(+) (sbcB) [Escherichia coli strain KMi025]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583