Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   L4998_RS05910 Genome accession   NZ_CP091644
Coordinates   1135675..1136169 (+) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain YH504     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130675..1141169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS05895 (L4998_05895) - 1132053..1133234 (-) 1182 WP_002777347.1 metal-dependent hydrolase -
  L4998_RS05900 (L4998_05900) - 1133243..1134142 (-) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  L4998_RS05905 (L4998_05905) gatB 1134142..1135560 (-) 1419 WP_002777351.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  L4998_RS05910 (L4998_05910) luxS 1135675..1136169 (+) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  L4998_RS05915 (L4998_05915) - 1136485..1137477 (+) 993 WP_002788130.1 isopenicillin N synthase family oxygenase -
  L4998_RS05920 (L4998_05920) - 1137491..1138261 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  L4998_RS05925 (L4998_05925) metE 1138284..1140548 (+) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=562156 L4998_RS05910 WP_002786475.1 1135675..1136169(+) (luxS) [Campylobacter coli strain YH504]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=562156 L4998_RS05910 WP_002786475.1 1135675..1136169(+) (luxS) [Campylobacter coli strain YH504]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701