Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | KFV38_RS06935 | Genome accession | NZ_CP073895 |
| Coordinates | 1345953..1346927 (+) | Length | 324 a.a. |
| NCBI ID | WP_001831109.1 | Uniprot ID | A0A9Q5JKD6 |
| Organism | Staphylococcus epidermidis strain V1937538 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1340953..1351927
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFV38_RS06900 (KFV38_06905) | rpmG | 1341433..1341582 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| KFV38_RS06905 (KFV38_06910) | - | 1341765..1342316 (+) | 552 | WP_001831001.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| KFV38_RS06910 (KFV38_06915) | - | 1342317..1343777 (+) | 1461 | WP_002484879.1 | rhomboid family intramembrane serine protease | - |
| KFV38_RS06915 (KFV38_06920) | - | 1343761..1343961 (+) | 201 | WP_001831138.1 | YqgQ family protein | - |
| KFV38_RS06920 (KFV38_06925) | - | 1343961..1344947 (+) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| KFV38_RS06925 (KFV38_06930) | - | 1344947..1345273 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| KFV38_RS06930 (KFV38_06935) | - | 1345273..1345896 (+) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| KFV38_RS06935 (KFV38_06940) | comGA | 1345953..1346927 (+) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| KFV38_RS06940 (KFV38_06945) | comGB | 1346899..1347966 (+) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| KFV38_RS06945 (KFV38_06950) | comGC | 1347984..1348301 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| KFV38_RS06950 (KFV38_06955) | comGD | 1348291..1348728 (+) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| KFV38_RS06955 (KFV38_06960) | - | 1348715..1349008 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| KFV38_RS06960 (KFV38_06965) | - | 1348932..1349423 (+) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| KFV38_RS06965 (KFV38_06970) | - | 1349588..1350100 (+) | 513 | WP_002440040.1 | shikimate kinase | - |
| KFV38_RS06970 (KFV38_06975) | gcvT | 1350318..1351409 (+) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37330.44 Da Isoelectric Point: 8.8174
>NTDB_id=562040 KFV38_RS06935 WP_001831109.1 1345953..1346927(+) (comGA) [Staphylococcus epidermidis strain V1937538]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=562040 KFV38_RS06935 WP_001831109.1 1345953..1346927(+) (comGA) [Staphylococcus epidermidis strain V1937538]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.062 |
100 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.062 |
100 |
0.701 |