Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6D13_RS09260 Genome accession   NZ_CP091534
Coordinates   1942751..1944178 (-) Length   475 a.a.
NCBI ID   WP_001774535.1    Uniprot ID   -
Organism   Escherichia coli strain 537-20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1937751..1949178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6D13_RS09230 (L6D13_09230) yeeZ 1937806..1938630 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  L6D13_RS09235 (L6D13_09235) yeeY 1938676..1939605 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L6D13_RS09240 (L6D13_09240) yoeI 1939820..1939882 (+) 63 WP_010723108.1 membrane protein YoeI -
  L6D13_RS09245 (L6D13_09245) plaP 1939872..1941230 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6D13_RS09250 (L6D13_09250) tsuA 1941409..1942467 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  L6D13_RS09255 (L6D13_09255) tsuB 1942481..1942708 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6D13_RS09260 (L6D13_09260) sbcB 1942751..1944178 (-) 1428 WP_001774535.1 exodeoxyribonuclease I Machinery gene
  L6D13_RS09265 (L6D13_09265) dacD 1944387..1945553 (+) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6D13_RS09270 (L6D13_09270) sbmC 1945672..1946145 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  L6D13_RS09275 (L6D13_09275) yeeA 1946343..1947401 (+) 1059 WP_001200890.1 FUSC family protein -
  L6D13_RS09280 (L6D13_09280) tmaR 1947573..1947902 (+) 330 WP_000450409.1 DUF496 family protein -
  L6D13_RS09285 (L6D13_09285) - 1948003..1948185 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  L6D13_RS09290 (L6D13_09290) - 1948257..1948385 (+) 129 Protein_1827 transposase domain-containing protein -
  L6D13_RS09295 (L6D13_09295) - 1948674..1948754 (-) 81 Protein_1828 hypothetical protein -
  L6D13_RS09300 (L6D13_09300) yeeW 1948800..1948994 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.73 Da        Isoelectric Point: 5.5911

>NTDB_id=562011 L6D13_RS09260 WP_001774535.1 1942751..1944178(-) (sbcB) [Escherichia coli strain 537-20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVHFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=562011 L6D13_RS09260 WP_001774535.1 1942751..1944178(-) (sbcB) [Escherichia coli strain 537-20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCATTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577