Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LVJ79_RS08455 Genome accession   NZ_CP091518
Coordinates   1586889..1589168 (+) Length   759 a.a.
NCBI ID   WP_003787624.1    Uniprot ID   F5S8B5
Organism   Kingella kingae strain 4177/66     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1581889..1594168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS08435 (LVJ79_08435) - 1582450..1583364 (+) 915 WP_003787629.1 CobW family GTP-binding protein -
  LVJ79_RS08440 (LVJ79_08440) - 1583519..1585600 (+) 2082 WP_003787627.1 carbon starvation CstA family protein -
  LVJ79_RS08445 (LVJ79_08445) - 1585608..1585802 (+) 195 WP_032827794.1 YbdD/YjiX family protein -
  LVJ79_RS08450 (LVJ79_08450) ppsR 1585889..1586713 (+) 825 WP_003787625.1 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR -
  LVJ79_RS08455 (LVJ79_08455) comA 1586889..1589168 (+) 2280 WP_003787624.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVJ79_RS08460 (LVJ79_08460) msbA 1589535..1591385 (+) 1851 WP_003787620.1 lipid A export permease/ATP-binding protein MsbA -
  LVJ79_RS08465 (LVJ79_08465) dinB 1591591..1592640 (-) 1050 WP_032827768.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 759 a.a.        Molecular weight: 83691.76 Da        Isoelectric Point: 8.8291

>NTDB_id=561784 LVJ79_RS08455 WP_003787624.1 1586889..1589168(+) (comA) [Kingella kingae strain 4177/66]
MPPTRYLAAFCIGAISSFYLPEQGNVWAWCVGLLLCAGLAFCLRRVAWQQKAACTFLCLLLGAIYAIERTEIALSQAYPA
QLYPTSQTIRVQVTGLPETDENGRTRFIGIAQTANQQNYRVLFQDYYARDWRVGDVWQTTARIRAAVATRNPVGFDREAW
ALANGIDGMASLGKEREAVSVSTKSSLHFFNQLRADIVQTWQRNASADYPQGVGLMTALAVGNRSDLSQAAWDSFRPLGL
NHLISISGLHISMVGVLAAWLAQRCMRLLPVLPARPKVISIIVGWLAAVVYTGLAGWEIPALRSLIMLTVWAIAWLARGH
WGVWQTWWAACTAVLLYQPTSVLAVGFWLSFGLVGALLWALSCRLPSRPKPYDTLRQAFIGQWAATLVGGIATIFLFGIL
AVYSPLVNAVAIPFFSSILTPLALVASALPFAPLQRLAAWLGEHTIHILLALSRHLPEQAFAQPPSFLFWLTIFSTLIIL
LPRGTALKPLACVIIASFLLYTPPAPRAPLAVHVWDVGQGLSVLLQTRHHNLLFDTGTPAAEMALLPNLRALGIQQIDTL
VLSHHDNDHDGGYAALHRAMPIRQTWAGQPAHYANAKPCTHSTNWQQDGVWFEFLTPNTQSDNDNDQSCVLRIVAGEQAL
LIMGDVGNDGETALLRQYGEQLASQVLVLGHHGSKSSSHARFLDHVAPSVAIASSGFANHFRHPHPDVQQRLASRQIALW
RTDTQGSLHFELGNHRAIELIEQQKKWWQRKPFAALPPS

Nucleotide


Download         Length: 2280 bp        

>NTDB_id=561784 LVJ79_RS08455 WP_003787624.1 1586889..1589168(+) (comA) [Kingella kingae strain 4177/66]
ATGCCCCCAACACGCTACTTGGCTGCCTTTTGCATTGGCGCGATAAGCAGTTTTTATTTGCCCGAACAAGGCAATGTGTG
GGCGTGGTGTGTGGGTTTGCTATTGTGTGCAGGTTTGGCTTTTTGTTTACGCCGTGTCGCGTGGCAACAAAAAGCAGCCT
GCACTTTTTTGTGCCTACTTTTGGGCGCGATTTATGCGATTGAGCGTACCGAAATCGCGCTATCGCAAGCCTATCCAGCA
CAACTGTATCCGACTTCGCAAACGATTCGCGTACAGGTAACGGGTTTGCCTGAAACCGATGAAAACGGCAGAACGCGCTT
TATTGGCATCGCCCAAACAGCCAATCAACAAAACTATCGCGTGCTGTTCCAAGATTATTATGCGCGAGACTGGCGCGTGG
GCGATGTGTGGCAAACGACTGCGCGTATTCGTGCGGCGGTTGCCACGCGCAATCCAGTAGGCTTTGACCGCGAAGCGTGG
GCATTAGCAAACGGCATAGACGGCATGGCATCGTTGGGCAAAGAACGTGAAGCAGTCTCCGTGTCCACCAAAAGCAGCCT
GCACTTTTTTAACCAACTTCGCGCCGACATCGTGCAAACATGGCAGCGCAACGCCAGCGCAGACTATCCGCAAGGCGTGG
GCTTGATGACGGCTTTGGCGGTGGGCAATCGCAGCGATTTGTCGCAGGCTGCTTGGGATTCGTTTCGTCCGTTGGGACTG
AATCATTTAATTAGCATTTCGGGTTTGCACATTAGCATGGTGGGCGTGTTGGCAGCGTGGTTGGCGCAGCGTTGTATGCG
ACTGCTGCCTGTGTTGCCAGCGCGTCCCAAAGTCATCAGCATAATCGTGGGCTGGTTGGCGGCGGTGGTTTATACGGGTT
TGGCAGGCTGGGAAATTCCTGCACTTCGCAGCTTAATCATGCTCACGGTGTGGGCAATCGCGTGGCTGGCGCGTGGACAT
TGGGGCGTGTGGCAAACGTGGTGGGCAGCCTGCACCGCCGTGTTGCTGTATCAACCCACATCGGTGCTGGCGGTTGGGTT
TTGGCTATCGTTTGGCTTGGTGGGCGCGTTGTTGTGGGCGTTATCGTGCAGGCTGCCTAGTCGCCCCAAACCATACGACA
CATTGCGCCAAGCATTCATCGGGCAATGGGCGGCAACGCTGGTGGGCGGCATTGCCACGATTTTTTTGTTTGGCATACTC
GCCGTGTACAGCCCATTGGTTAATGCTGTTGCCATACCGTTTTTTTCTAGCATACTCACACCGCTGGCATTAGTCGCGTC
CGCCCTGCCATTCGCACCACTGCAACGCCTAGCCGCATGGTTGGGCGAACACACCATACATATCTTGCTCGCATTAAGCC
GACATCTGCCCGAACAAGCCTTCGCACAACCGCCTAGTTTCTTGTTTTGGCTGACCATTTTTTCCACGCTGATTATTTTG
TTACCACGCGGCACAGCACTCAAACCGCTCGCTTGCGTCATCATCGCCAGTTTTTTGCTCTACACGCCCCCTGCCCCACG
CGCACCGCTTGCCGTTCACGTTTGGGACGTAGGGCAAGGCTTGTCGGTGCTATTGCAAACGCGCCACCACAATCTTTTGT
TTGACACAGGCACACCAGCCGCTGAAATGGCATTGTTACCCAATCTACGTGCACTCGGCATACAGCAAATAGACACGCTC
GTCTTATCGCACCACGACAACGACCACGATGGCGGCTACGCAGCATTGCACCGCGCTATGCCAATCCGCCAAACATGGGC
AGGGCAGCCTGCACATTACGCCAATGCCAAGCCCTGCACACACAGCACAAATTGGCAACAAGACGGCGTGTGGTTTGAAT
TTTTAACGCCCAACACGCAATCCGACAACGACAACGACCAAAGCTGCGTATTGCGAATTGTGGCTGGCGAACAGGCGTTG
CTGATAATGGGCGATGTGGGCAACGATGGCGAAACCGCCCTGCTCCGTCAATATGGCGAACAACTAGCAAGTCAAGTATT
GGTGCTGGGGCATCACGGCAGCAAATCGTCCAGCCACGCCCGTTTTTTAGACCACGTTGCGCCCAGCGTTGCCATTGCCA
GCAGCGGTTTTGCCAACCATTTTCGCCACCCACACCCTGATGTACAGCAGCGTTTAGCCAGCCGACAAATTGCACTTTGG
CGCACCGACACGCAAGGCAGCCTGCACTTTGAACTGGGCAACCATCGCGCGATTGAATTGATTGAACAGCAAAAAAAATG
GTGGCAACGCAAGCCGTTTGCCGCGCTGCCACCCAGTTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(516-579)

Competence protein (Competence)

(219-480)

Domain of unknown function (DUF4131) (DUF4131)

(24-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S8B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

45.545

93.149

0.424