Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LVJ79_RS08170 Genome accession   NZ_CP091518
Coordinates   1526402..1528378 (+) Length   658 a.a.
NCBI ID   WP_032827801.1    Uniprot ID   -
Organism   Kingella kingae strain 4177/66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1521402..1533378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS08150 (LVJ79_08150) iscR 1522106..1522555 (-) 450 WP_003787741.1 Fe-S cluster assembly transcriptional regulator IscR -
  LVJ79_RS08155 (LVJ79_08155) trpE 1522698..1524173 (-) 1476 WP_003787739.1 anthranilate synthase component I -
  LVJ79_RS08160 (LVJ79_08160) - 1524199..1525218 (-) 1020 WP_003787736.1 glycosyltransferase family 4 protein -
  LVJ79_RS08165 (LVJ79_08165) - 1525205..1525987 (-) 783 WP_003787735.1 glycosyltransferase family 2 protein -
  LVJ79_RS08170 (LVJ79_08170) recP/tkt 1526402..1528378 (+) 1977 WP_032827801.1 transketolase Machinery gene
  LVJ79_RS08175 (LVJ79_08175) - 1528447..1529142 (+) 696 WP_003787728.1 hypothetical protein -
  LVJ79_RS08180 (LVJ79_08180) - 1529273..1530100 (-) 828 WP_003787727.1 ATP-grasp domain-containing protein -
  LVJ79_RS08185 (LVJ79_08185) - 1530186..1530617 (-) 432 WP_003787724.1 pseudoazurin -
  LVJ79_RS08190 (LVJ79_08190) - 1530629..1531423 (-) 795 WP_003787722.1 ABC transporter ATP-binding protein -
  LVJ79_RS08195 (LVJ79_08195) - 1531434..1532672 (-) 1239 WP_003787721.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 70871.30 Da        Isoelectric Point: 6.0856

>NTDB_id=561783 LVJ79_RS08170 WP_032827801.1 1526402..1528378(+) (recP/tkt) [Kingella kingae strain 4177/66]
MATKTANAIRFLSMDMVQQANSGHPGAPMGMADMADVLWREFLQHNPANPKFPNRDRFVLSNGHASALLYSVLHLSGYNL
SADDLKNFRQLHSKTAGHPEYGYADGVETTTGPLGQGIANAVGMALAERLLAKEFNQDGLDIVNHHTYVFLGDGCLMEGV
SHEAASLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPARFESYGWQAIRDVDGHNPEAIRAAIQAAQAETNKPTIIC
CKTLIGKGAANKEGSHKTHGAPLGADEIAATRAHLGWEYAPFEVPADVYAAWDAKEKGAKLESAWNELFAQYAAKFPEKA
AEFTRRINGTLPENFDAHVQAALTEISEKAEKIATRKASQNSIEILAKVLPEFVGGSADLTPSNLTDWSNSVSVKPQQGG
NYVHYGVREFGMAAIMNGMALHGGVKPFGATFLMFSEYARNALRMAALMKINPIFVFTHDSIGLGEDGPTHQPVEQTATL
RMIPNMAVWRPCDTAESLIAWAEAAKAKDHPSCLIFSRQNLPFVPRSAEQLANVKHGGYVISAKDNAKAVIIATGSEVEL
ALNAQKALAEQGVSVNVVSMPSTNVFDKQDVAYKASVLPADLPKVAVEAGVTDGWYKYVGNGAVVGINRFGESAPADLLF
KEYGFTVENVVSVVKSVL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=561783 LVJ79_RS08170 WP_032827801.1 1526402..1528378(+) (recP/tkt) [Kingella kingae strain 4177/66]
ATGGCAACCAAAACCGCCAACGCTATCCGCTTCCTGTCAATGGACATGGTTCAACAAGCCAACTCTGGACACCCCGGTGC
GCCAATGGGCATGGCAGACATGGCAGACGTTTTGTGGCGCGAATTTTTGCAACACAATCCAGCCAATCCCAAATTCCCTA
ACCGCGACCGCTTTGTTTTGTCAAACGGACACGCATCAGCCTTGCTTTACAGCGTATTGCATTTGAGCGGCTACAATTTG
TCGGCTGACGATTTGAAAAATTTCCGCCAACTGCACAGCAAAACCGCAGGACACCCAGAATACGGCTACGCGGACGGCGT
GGAAACCACCACAGGGCCACTCGGTCAAGGCATTGCGAATGCAGTCGGCATGGCATTGGCAGAACGCTTGTTAGCAAAAG
AATTTAACCAAGACGGTTTGGACATCGTCAATCACCACACCTACGTTTTCTTGGGTGACGGCTGTTTAATGGAAGGCGTA
TCGCACGAAGCGGCATCATTGGCTGGCACATTGGGCTTGGGCAAACTGATTGTTTTGTATGATGATAATAATATTTCCAT
TGACGGCAAAGTAGATGGCTGGTTTACCGAAAATATCCCAGCGCGTTTTGAAAGCTACGGCTGGCAAGCAATCCGCGATG
TAGATGGACACAATCCCGAAGCCATCCGCGCAGCCATTCAGGCAGCCCAAGCCGAAACCAACAAACCAACAATCATTTGC
TGCAAAACCTTAATCGGCAAAGGCGCAGCCAACAAAGAAGGCAGCCACAAAACGCACGGCGCACCATTGGGCGCAGACGA
AATCGCCGCCACTCGCGCCCATTTGGGTTGGGAATACGCACCGTTTGAAGTGCCAGCCGACGTGTACGCCGCTTGGGACG
CAAAAGAAAAAGGCGCGAAATTGGAAAGCGCGTGGAACGAGTTGTTCGCGCAATACGCCGCTAAATTCCCCGAAAAAGCA
GCCGAATTTACGCGCCGCATTAACGGAACGCTGCCTGAAAACTTTGACGCTCATGTGCAGGCTGCATTAACCGAAATCAG
CGAAAAAGCAGAAAAAATCGCCACACGCAAAGCCAGCCAAAACAGCATTGAAATTTTGGCAAAAGTGCTGCCTGAATTTG
TGGGCGGTTCGGCGGATTTGACCCCGTCTAATTTGACCGATTGGTCTAACAGCGTTTCCGTGAAACCGCAACAAGGCGGC
AACTATGTTCATTATGGCGTGCGCGAATTTGGTATGGCGGCGATTATGAATGGCATGGCATTGCACGGCGGCGTGAAACC
GTTTGGCGCGACATTCTTGATGTTTAGCGAATACGCGCGTAATGCCTTGCGTATGGCGGCGTTGATGAAAATTAACCCGA
TTTTCGTGTTCACGCACGACAGCATTGGTTTAGGCGAAGATGGCCCAACGCACCAACCTGTTGAGCAAACCGCGACTTTG
CGTATGATTCCGAATATGGCGGTTTGGCGTCCTTGCGACACAGCAGAAAGCCTGATTGCGTGGGCGGAAGCAGCAAAAGC
GAAAGACCACCCAAGCTGCTTGATTTTCAGCCGTCAGAATTTGCCATTTGTGCCACGCAGCGCGGAGCAGTTGGCGAATG
TGAAACATGGCGGCTATGTGATTTCCGCAAAAGACAACGCGAAAGCCGTGATTATCGCCACAGGTTCGGAAGTGGAATTG
GCATTGAACGCACAAAAAGCGTTAGCAGAACAAGGCGTTTCTGTGAACGTGGTTTCTATGCCGTCCACCAATGTATTTGA
TAAACAAGACGTGGCGTATAAAGCGAGCGTGTTGCCTGCGGATTTGCCGAAAGTGGCTGTGGAAGCTGGTGTAACAGACG
GTTGGTATAAATATGTTGGTAATGGCGCAGTTGTGGGTATCAATCGCTTTGGCGAATCTGCACCTGCTGATTTGTTGTTT
AAAGAATATGGTTTCACGGTTGAGAATGTGGTTTCGGTTGTGAAGTCGGTTTTGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)

Transketolase, C-terminal domain (Transketolase_C)

(540-650)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.526

100

0.482