Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L3080_RS17810 Genome accession   NZ_CP091465
Coordinates   3747274..3747909 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain NCCP 16007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3742274..3752909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3080_RS17785 - 3742330..3743310 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  L3080_RS17790 kdsB 3743322..3744083 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L3080_RS17795 lpxK 3744093..3745103 (-) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  L3080_RS17800 msbA 3745106..3746833 (-) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  L3080_RS17805 - 3746830..3747258 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  L3080_RS17810 exbB 3747274..3747909 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L3080_RS17815 - 3747959..3748846 (-) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  L3080_RS17820 - 3748843..3749625 (-) 783 WP_000057212.1 ParA family protein -
  L3080_RS17825 rsmG 3749647..3750279 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  L3080_RS17830 murU 3750367..3751056 (-) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  L3080_RS17835 - 3751056..3752069 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=561738 L3080_RS17810 WP_000264037.1 3747274..3747909(-) (exbB) [Acinetobacter baumannii strain NCCP 16007]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=561738 L3080_RS17810 WP_000264037.1 3747274..3747909(-) (exbB) [Acinetobacter baumannii strain NCCP 16007]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393