Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MYO_RS08870 Genome accession   NC_020286
Coordinates   1867129..1869471 (+) Length   780 a.a.
NCBI ID   WP_020862340.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862129..1874471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYO_RS08845 (MYO_117160) - 1862708..1863472 (+) 765 WP_010872895.1 iron uptake porin -
  MYO_RS08850 (MYO_117170) - 1863502..1863942 (+) 441 WP_010872896.1 hypothetical protein -
  MYO_RS08855 (MYO_117180) pilM 1864127..1865230 (+) 1104 WP_010872897.1 type IV pilus biogenesis protein PilM Machinery gene
  MYO_RS08860 (MYO_117190) pilN 1865312..1866166 (+) 855 WP_010872898.1 PilN domain-containing protein Machinery gene
  MYO_RS08865 (MYO_117200) pilO 1866206..1867033 (+) 828 WP_010872899.1 pilus assembly protein Machinery gene
  MYO_RS08870 (MYO_117210) pilQ 1867129..1869471 (+) 2343 WP_020862340.1 type IV pilus secretin PilQ Machinery gene
  MYO_RS08875 (MYO_117220) - 1869480..1870304 (-) 825 WP_010872901.1 FkbM family methyltransferase -
  MYO_RS08880 (MYO_117230) - 1870324..1871058 (-) 735 WP_010872902.1 FkbM family methyltransferase -
  MYO_RS08885 (MYO_117240) tilS 1871125..1872117 (+) 993 WP_010872903.1 tRNA lysidine(34) synthetase TilS -
  MYO_RS08890 (MYO_117250) thrC 1872167..1873315 (-) 1149 WP_010872904.1 threonine synthase -
  MYO_RS08895 (MYO_117260) ndhC 1873598..1873960 (+) 363 WP_010872905.1 photosynthetic/respiratory NAD(P)H-quinone oxidoreductase subunit C -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 84098.34 Da        Isoelectric Point: 4.3538

>NTDB_id=56172 MYO_RS08870 WP_020862340.1 1867129..1869471(+) (pilQ) [Synechocystis sp. PCC 6803]
MKNFRFWLTTEIATCCLLALAPAQAETVSQSNTLDGDLRTAIAGDSSRDWLQFEKSLEQSLKQKEEIDSWKPSLELMQAK
SLVKPGQKLTNIELLVQELEALSDPLALNFPEPNQTSVAQMAPPSRPMPPPPAGSGQVMFPNPEIIIQQQGGVPQRGASP
QVGNPSILSPAVPVAPVRSRAVPPPVGDLAISNINASFDMIDLGQRGQVNVPSLVLREAPAREVLAVLTRYAGMNLIFTD
NQNNEGTPTPGTPPGGQVAPPQAQSTITLDIQNESVQDVFNYVLMASGLKASRRGNTIFAGANLLPSARNIITRTIRLNQ
ASAESVASTLASQGAEVNILFEGQEDVQLAENAPPRVIKQPPTLVPLTVQKPANDSSVLILEGLVVSTDPRLNTVTLVGE
PRNVELASSMITQMDARRRQVAVNVKIIDINLNNIQDYDSSFSFGIGDSFFVQDSGSAVMRFGDTAPVQEIDINNNLGRI
TNPPAIVNPFQDGEIFFDLNRITNIEVPLGPGTIPINFFTSGSGAVSNNPLFNGVTEFPIVEVDEQGLLTITQPEFGLPS
FYQYPKKFQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPVLEDVGLTLNVIVD
RIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGVVRLRDDQTFILSGIISELQRSTTSKVPILGDLP
VIGALFRQSTDTTDRSEVIILMTPKIIHDSTEAQFGFRYNPDAATAEFLRQKGFPVQAQP

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=56172 MYO_RS08870 WP_020862340.1 1867129..1869471(+) (pilQ) [Synechocystis sp. PCC 6803]
GTGAAAAATTTTCGGTTTTGGTTAACAACGGAAATAGCGACCTGTTGCTTGTTGGCCCTAGCGCCTGCCCAGGCAGAAAC
GGTTTCCCAGTCAAATACTTTGGATGGAGATTTGCGGACGGCGATCGCCGGTGACTCAAGTCGAGATTGGCTACAGTTTG
AAAAGAGTTTGGAGCAGTCTCTCAAGCAAAAAGAAGAAATTGATTCTTGGAAACCATCATTGGAGTTGATGCAGGCTAAA
TCCCTTGTCAAACCAGGGCAAAAGTTGACGAATATTGAGTTGCTGGTGCAGGAGTTGGAAGCCTTATCCGACCCACTGGC
ATTAAATTTTCCAGAACCGAACCAGACCAGTGTTGCTCAAATGGCTCCCCCCAGCCGCCCTATGCCTCCCCCTCCAGCGG
GCAGTGGGCAGGTCATGTTTCCCAATCCCGAAATAATCATCCAACAGCAGGGTGGTGTGCCCCAACGTGGTGCCAGCCCT
CAGGTGGGAAATCCTAGCATTTTATCTCCTGCGGTACCTGTGGCTCCGGTACGTTCCCGGGCTGTGCCGCCACCAGTGGG
GGATTTGGCCATTTCCAACATCAATGCTTCCTTCGACATGATTGATCTTGGCCAAAGGGGTCAGGTTAACGTACCAAGCT
TGGTACTACGGGAGGCCCCAGCAAGGGAAGTTTTGGCTGTGCTAACCCGTTATGCTGGCATGAATCTAATTTTTACCGAT
AACCAAAACAATGAAGGCACTCCTACCCCAGGTACACCTCCCGGTGGTCAGGTTGCTCCTCCCCAAGCTCAGTCAACCAT
TACTCTGGACATTCAAAATGAAAGTGTTCAGGACGTTTTTAACTACGTTCTGATGGCCTCAGGGCTAAAAGCTAGTCGTC
GGGGTAACACAATTTTCGCTGGGGCTAATCTTTTGCCTTCGGCTCGAAATATTATTACCCGCACTATCCGGTTGAACCAG
GCTAGTGCTGAGTCTGTGGCCAGTACTTTGGCTTCTCAGGGTGCGGAAGTTAACATCCTATTTGAAGGTCAGGAAGATGT
TCAGTTGGCAGAAAATGCGCCGCCAAGGGTAATTAAGCAGCCTCCTACTCTAGTTCCCTTAACTGTTCAAAAACCAGCCA
ACGATTCTTCAGTTTTAATTCTGGAAGGGCTAGTGGTTAGCACTGATCCCCGTTTAAACACTGTAACCCTGGTGGGTGAA
CCCCGTAATGTGGAATTGGCTAGTTCCATGATTACTCAAATGGATGCTCGCCGCCGCCAAGTGGCAGTAAACGTCAAAAT
TATTGACATCAATCTTAATAATATTCAAGATTATGACAGCAGTTTTTCCTTTGGCATAGGAGATAGTTTCTTTGTCCAAG
ACAGTGGTTCTGCGGTCATGCGCTTTGGTGACACGGCTCCAGTTCAGGAAATTGATATCAACAATAACCTGGGGCGAATC
ACTAATCCACCTGCCATTGTTAATCCTTTTCAAGACGGAGAGATTTTCTTTGATCTTAATAGAATAACTAACATTGAAGT
GCCTCTTGGCCCAGGGACCATCCCCATAAATTTCTTCACATCAGGTTCTGGAGCCGTTTCCAACAATCCATTGTTTAATG
GAGTTACTGAATTTCCAATTGTGGAGGTAGATGAACAAGGTCTGTTAACAATCACCCAACCTGAGTTTGGTTTGCCATCT
TTTTATCAATATCCTAAAAAGTTTCAGGCACAAATTGACGCTCAAATACGTAGTGGGAATGCGAAAATTCTCACCGATCC
AACTTTGATTGTTCAAGAAGGCGAGGCTGCTCAAGTTAAGTTAACAGAATCTGTTATTGCCAGCGTTGATACGCAAGTTG
ATACCCAGGGAGATACAGCAGTTAGAACTATTACGCCGGTTCTGGAAGATGTTGGATTAACACTAAATGTCATAGTTGAT
CGAATTGATGACAATGGCTTTATTACTTTGCGCGTTAATCCAATCGTTGCATCTCCTGCTGGAACACAAGTATTTGATAG
TGGTGCTGGCGCCATCAACGAAATAACACTGATAAACAAAAGGGAACTTACTTCCGGTGTAGTTCGGCTGAGGGATGATC
AGACATTCATTCTATCTGGCATTATTTCGGAACTTCAACGTTCTACCACAAGTAAAGTTCCAATTCTAGGGGATTTACCG
GTGATTGGAGCATTGTTTAGGCAGTCCACAGACACAACAGACCGTTCGGAAGTTATTATTCTCATGACCCCCAAGATCAT
TCATGATAGTACAGAGGCGCAGTTTGGCTTCCGTTACAATCCTGACGCGGCTACGGCGGAATTCCTGCGGCAGAAAGGAT
TTCCCGTTCAGGCTCAGCCATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(576-748)

Bacterial type II/III secretion system short domain (Secretin_N)

(313-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment