Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L3080_RS02840 Genome accession   NZ_CP091465
Coordinates   607755..608696 (-) Length   313 a.a.
NCBI ID   WP_001210787.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NCCP 16007     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 602755..613696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3080_RS02825 bauB 605066..606034 (-) 969 WP_001104139.1 siderophore-binding periplasmic lipoprotein BauB -
  L3080_RS02830 bauE 606041..606811 (-) 771 WP_000582115.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  L3080_RS02835 bauC 606808..607755 (-) 948 WP_001223274.1 ferric acinetobactin ABC transporter permease subunit BauC -
  L3080_RS02840 ceuB 607755..608696 (-) 942 WP_001210787.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  L3080_RS18375 - 608696..608827 (-) 132 WP_001218004.1 hypothetical protein -
  L3080_RS02845 basB 609328..611358 (+) 2031 WP_000939834.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  L3080_RS02850 basA 611429..613276 (-) 1848 WP_000910253.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34037.17 Da        Isoelectric Point: 8.6941

>NTDB_id=561673 L3080_RS02840 WP_001210787.1 607755..608696(-) (ceuB) [Acinetobacter baumannii strain NCCP 16007]
MRFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNMVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=561673 L3080_RS02840 WP_001210787.1 607755..608696(-) (ceuB) [Acinetobacter baumannii strain NCCP 16007]
ATGCGATTTGGCTTATTCTGTATTTTTATCATTTTATGTATTTGTTCGTTATTGCTGGGGGCTGAACAAATACAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTAATTACTATTGTGCTTA
CCGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAGCACATTGTGCGTAACAAGTTTGTTGAACCGGAAACTTCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATCCGCCGGATCCGTTTTAGAAATATGGTTTTAG
TACCGGTAATTGGTTTGATGTACGGCAGTGTACTGAGCGCTTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTTGCACACCGCTTTACCGTGATTGGTATGGGTGAAGAGATGGCTTCTAGCCTAGGACTTA
GTTATGCAGCTATAGCCGCTATTGGTTTAATACTGGTTGCCATTACGGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTGCCCAATTTGGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTAGGTGGGGCGTCTCTATTACTGATTTGCGACATTCTTGGTCGCTCGATTATTTATCCATTTGAAGTGCCGATCGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419