Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LGY76_RS08890 Genome accession   NZ_CP091452
Coordinates   1804198..1804833 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain AB329     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1799198..1809833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGY76_RS08865 - 1800038..1801051 (+) 1014 WP_001096106.1 phosphotransferase -
  LGY76_RS08870 murU 1801051..1801740 (+) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LGY76_RS08875 rsmG 1801828..1802460 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LGY76_RS08880 - 1802482..1803264 (+) 783 WP_000057212.1 ParA family protein -
  LGY76_RS08885 - 1803261..1804148 (+) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  LGY76_RS08890 exbB 1804198..1804833 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LGY76_RS08895 - 1804849..1805277 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  LGY76_RS08900 msbA 1805274..1807001 (+) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  LGY76_RS08905 lpxK 1807004..1808014 (+) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  LGY76_RS08910 kdsB 1808024..1808785 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LGY76_RS08915 - 1808797..1809777 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=561625 LGY76_RS08890 WP_000264037.1 1804198..1804833(+) (exbB) [Acinetobacter baumannii strain AB329]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=561625 LGY76_RS08890 WP_000264037.1 1804198..1804833(+) (exbB) [Acinetobacter baumannii strain AB329]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393